ChickenSD

ChickenSD / Individual SNP / ggaS0006001023089

Detail information of ggaS0006001023089

1.General Information

SNP ID: ggaS0006001023089
Organism: Gallus gallus
Individual: 105S_L3_I039

2.Allele information

Platform: SOLEXA
Method: sequence
SNP Class: SNP
Genotype: T

3.Reference Map information

Chrom Position Reference 105S_L3_I039
chr11 1658 C T

4.Gene information

Var ID Gene ID Transcript ID Gene Symbol Variant Effect Biotype cDNA Position Allele Change Protein ID Protein Position Residue Change
ggaS0006001023089 - intergenic_variant => =>

5.Individual Genotype

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Individual Genotype
100S T
101S_L1_I028 C
102S_L3_I037 Y
103S C
104S_L7_I029 Y
106S_L6_I030 Y
107S_L2_I031 Y
108S_L6_I032 Y
109S_L5_I033 Y
10S_L1_I052 Y
110S_L4_I034 C
111S_L3_I047 Y
112S_L3_I035 Y
113S_L1_I036 Y
114S_L3_I037 C
116S_L6_I038 C
117S_L2_I039 Y
118S_L4_I040 Y
119S_L3_I041 Y
11S C
120S_L1_I041 Y
121S_L3_I042 Y
122S_L4_I043 C
123S_L4_I044 C
124S_L2_I048 Y
125S_L3_I050 Y
126S_L3_I051 C
127S_L2_I045 Y
128S_L1_I042 Y
129S_L3_I043 Y
12S_L4_I011 Y
130S_L4_I044 Y
131S_L2_I045 Y
132S_L2_I046 Y
133S_L8_I046 Y
134S_L2_I047 Y
135S_L3_I048 Y
13S_L7_I012 Y
14S_L2_I021 Y
15S_L6_I022 Y
16S_L5_I023 Y
17S_L3_I024 Y
18833 Y
18S_L7_I025 C
19297 C
19912 Y
19S_L4_I026 Y
1S Y
20736 C
20S_L7_I027 C
21S_L6_I028 C
22S_L6_I029 Y
23S_L2_I030 Y
24S_L4_I031 Y
25S_L3_I032 C
26S C
27S_L4_I034 Y
28S_L4_I035 Y
29S_L3_I036 C
2S C
30S_L2_I037 Y
31S_L3_I038 Y
32S_L1_I039 C
33S Y
35S_L5_I041 Y
36S_L5_I042 Y
37S_L2_I043 Y
38S_L6_I044 C
39S_L6_I053 Y
3S_L4_I003 Y
40S_L2_I054 Y
41S_L5_I045 C
42S_L3_I055 Y
43S Y
44S_L4_I001 Y
45S_L2_I002 Y
46S_L4_I003 C
47S_L3_I046 Y
48S_L1_I004 Y
49S_L1_I005 C
4S_L4_I004 C
50S_L1_I047 C
51S_L6_I048 Y
52S_L2_I050 Y
53S_L2_I006 Y
54S_L2_I007 Y
55S_L1_I008 Y
56S_L1_I010 Y
57S_L3_I046 Y
58S_L4_I051 Y
59S_L5_I052 C
5S Y
60S_L5_I053 Y
61S_L8_I054 C
62S_L8_I055 Y
63S_L5_I056 Y
64S_L4_I001 Y
65S_L5_I002 Y
66S_L2_I003 Y
67S_L1_I011 Y
68S_L3_I012 Y
69S C
6S Y
70S Y
71S_L3_I023 Y
72S_L1_I024 Y
73S_L1_I025 C
74S_L4_I026 C
75S_L3_I027 Y
76S_L1_I028 Y
77S_L4_I029 Y
78S_L4_I030 Y
79S_L2_I031 C
7S_L4_I007 C
80S_L3_I004 C
81S_L1_I005 Y
82S Y
83S_L3_I033 C
84S_L5_I006 Y
85S_L5_I007 Y
86S_L5_I008 Y
87S_L5_I010 C
88S_L4_I011 Y
89S_L6_I012 T
90S_L4_I021 C
91S_L4_I022 Y
92S_L5_I023 Y
93S_L7_I024 Y
95S_L8_I025 Y
96S_L4_I026 Y
97S_L8_I027 Y
98S_L3_I034 Y
99S_L2_I035 Y
9S Y
A1 Y
A10 C
A12 Y
A14 Y
A3 Y
A8 Y
BKL2 Y
BLB1_L2_I007 Y
BLB2_L2_I008 Y
BLO1 Y
BLO11 Y
BLO15 Y
BLO2 T
BLO3_L4_I022 C
BOJA2 T
BYW3_L3_I033 Y
BYW5_L2_I010 T
GVF Y
India1 Y
India11 Y
India13 Y
India15 Y
India17 C
India19 Y
India21 Y
India23 C
India25 Y
India27 C
India29 Y
India31 Y
India33 C
India35 Y
India37 Y
India39 Y
India41 C
India43 Y
India45 Y
India47 Y
India5 C
India51 C
India55 Y
India57 Y
India59 Y
India61 Y
India7 Y
India9 Y
L2 Y
N1 C
N11 Y
N13 C
N18 Y
N3 C
N5 Y
N7 Y
N8 C
S-f1_L4_I106 C
S-f2_I107 C
S-f3_I108 C
S-f4_L4_I109 C
S-m1_I101 C
S-m2_I102 C
S-m3_I103 C
S-m4_L2_I104 Y
S-m5_I105 C
S6 C
SAMN02486156 Y
SAMN02486157 Y
SAMN02486158 C
SAMN02486159 C
SAMN02486160 Y
SAMN02486161 C
SAMN02486162 C
SAMN02486163 C
SAMN02486164 Y
SAMN02486165 Y
SAMN02486166 C
SAMN02486167 C
Silkia C
T2 C
T3 C
T5 C
TD1 C
TD12 Y
TD15 C
TD22 C
TD27 C
TD30 C
TD6 C
TD9 C
Tibet C
Xcelris_101 Y
Xcelris_104 Y
Xcelris_105 C
Xcelris_10A C
Xcelris_10B C
Xcelris_112 Y
Xcelris_113 C
Xcelris_114 C
Xcelris_11B C
Xcelris_12 Y
Xcelris_120 C
Xcelris_127 Y
Xcelris_128 Y
Xcelris_129 T
Xcelris_12A C
Xcelris_13 Y
Xcelris_137 C
Xcelris_13B C
Xcelris_14 C
Xcelris_142 C
Xcelris_143 Y
Xcelris_144 Y
Xcelris_14A C
Xcelris_14B C
Xcelris_174 C
Xcelris_176 C
Xcelris_1A C
Xcelris_1B C
Xcelris_219 Y
Xcelris_221 Y
Xcelris_222 C
Xcelris_224 C
Xcelris_226 C
Xcelris_227 C
Xcelris_275 C
Xcelris_278 C
Xcelris_279 C
Xcelris_280 C
Xcelris_282 C
Xcelris_2A C
Xcelris_2B Y
Xcelris_332 C
Xcelris_333 Y
Xcelris_335 C
Xcelris_336 C
Xcelris_339 C
Xcelris_340 C
Xcelris_341 C
Xcelris_36 C
Xcelris_377 C
Xcelris_378 C
Xcelris_379 C
Xcelris_380 Y
Xcelris_381 C
Xcelris_382 C
Xcelris_383 Y
Xcelris_384 Y
Xcelris_385 C
Xcelris_392 C
Xcelris_394 C
Xcelris_44 C
Xcelris_4A T
Xcelris_5 C
Xcelris_5A C
Xcelris_5B C
Xcelris_67 C
Xcelris_6A C
Xcelris_7 C
Xcelris_77 C
Xcelris_8 C
Xcelris_84 Y
Xcelris_8B C
Xcelris_90 C
Xcelris_97 C
Xcelris_98 Y
Xcelris_MT-134 C
Xcelris_MT-18 C
Xcelris_MT-46 C
Xcelris_MT-48 C
Xcelris_MT-6 C
Xcelris_MT-85 C
Xcelris_MT-9 C
Xcelris_MT-99 C
Y1-f1_L5_I119 C
Y1-f2_L6_I121 C
Y1-f3_L7_I101 C
Y1-m1_L6_I120 C
Y1-m2_L4_I122 C
Y1-m3_L7_I123 C
Y1-m4_I124 C
Y1-m5_L7_I102 C
YPt565 C
YPt601 C
YPt604 C
YPt609 C
YPt610 C
YPt637 C
YPt641 C
YPt648 C
You1 C
You3_L7_I1000005 C
Ypt566 C
Ypt567 C
Ypt568 C
Ypt569 C
Ypt570 C
Ypt571 C
Ypt572 C
Ypt573 C
Ypt574 C
Ypt575 C
Ypt576 Y
Ypt577 C
Ypt578 C
Ypt579 C
Ypt580 C
Ypt581 C
Ypt582 C
Ypt583 C
Ypt584 C
Ypt585 C
Ypt586 C
Ypt587 C
Ypt588 C
Ypt589 C
Ypt590 C
Ypt591 C
Ypt592 C
Ypt593 C
Ypt594 C
Ypt595 C
Ypt596 C
Ypt597 C
Ypt598 C
Ypt599 C
Ypt600 C
Ypt602 C
Ypt603 C
Ypt606 C
Ypt607 C
Ypt608 C
Ypt622 C
Ypt623 Y
Ypt624 C
Ypt626 C
Ypt638 C
Ypt640 C
Ypt642 C
Ypt643 Y
Ypt645 C
Ypt646 C
Yt516 C
Yt517 C
Yt518 C
Yt519 C
Yt520 C
Yt521 C
Yt522 C
Yt523 Y
Yt524 C
Yt525 Y
Yt526 Y
Yt527 C
Yt528 C
Yt529 C
Yt530 C
Yt531 C
Yt536 C
Yt538 C
Yt539 C
Yt540 C
ZJ1 C
ZJ2 C
ZJ3 Y
ZJ4 Y
india3 C
india49 C
production Y
yp914ypt Y
ypt169_L3_I011 Y
ypt170_L2_I012 Y
ypt171_L2_I021 Y
ypt173_L2_I022 Y
ypt175_L2_I023 Y
ypt2041_L6_I002 C
ypt2043_L1_I037 Y
ypt2051_L3_I003 C
ypt2053_L6_I004 C
ypt2063_L6_I005 C
ypt2069_L6_I006 C
ypt2071_L1_I038 C
ypt2082 Y
ypt2086 Y
ypt2087 Y
ypt2091 C
ypt2092 Y
ypt2093 C
ypt2094 Y
ypt2095 Y
ypt2098 C
ypt2100 Y
ypt2101 Y
ypt2102 Y
ypt2103 C
ypt2105 Y
ypt2106 Y
ypt2107 Y
ypt2108 Y
ypt2109 C
ypt2110 Y
ypt2111 C
ypt2112 Y
ypt2114 Y
ypt2115 Y
ypt2116 Y
ypt2117 Y
ypt2118 C
ypt2119 Y
ypt2120 Y
ypt2121 C
ypt2122 Y
ypt2124_L4_I052 Y
ypt2126_L3_I053 Y
ypt2127_L1_I036 Y
ypt2128_L6_I054 Y
ypt2144_L6_I055 C
ypt2145_L6_I056 Y
ypt2146_L6_I001 Y
ypt2163 Y
ypt2164 Y
ypt2165 Y
ypt2166 Y
ypt2167 Y
ypt2168 Y
ypt2169 C
ypt2170 C
ypt2171 Y
ypt2172 C
ypt2173 Y
ypt2174 C
ypt2175 C
ypt2176 C
ypt2177 Y
ypt2178 Y
ypt217_L2_I024 C
ypt2184 Y
ypt2185 Y
ypt2186 Y
ypt2187 Y
ypt2189 Y
ypt2190 C
ypt2191 Y
ypt219_L3_I025 Y
ypt2200 C
ypt2201 C
ypt2205 C
ypt2209 Y
ypt220_L2_I026 C
ypt2214 C
ypt2215 C
ypt2216 Y
ypt2217 Y
ypt2218 C
ypt2219 Y
ypt221_L3_I042 T
ypt2220 C
ypt2221 Y
ypt2222 C
ypt222_L3_I027 Y
ypt2437 C
ypt2438 Y
ypt2439 Y
ypt2440 Y
ypt2441 Y
ypt2442 Y
ypt2443 C
ypt2444 Y
ypt2445 Y
ypt2446 Y
ypt2447 C
ypt2448 C
ypt2449 Y
ypt2454 Y
ypt2459 Y
ypt2468 C
ypt2496 Y
ypt2497 Y
ypt2498 C
ypt2499 C
ypt2500 Y
ypt2503 Y
ypt2504 C
ypt2507 Y
ypt2512 Y
ypt2516 Y
ypt2521 Y
ypt2523 Y
ypt2534 Y
ypt2541 Y
ypt2543 Y
ypt2544 Y
ypt2545 Y
ypt2546 Y
ypt2547 Y
ypt2552 Y
ypt2562 Y
ypt2563 Y
ypt2569 Y
ypt2570 C
ypt2571 C
ypt2572 Y
ypt2573 Y
ypt2574 Y
ypt2575 C
ypt2579 C
ypt258_L3_I028 C
ypt2598 Y
ypt259_L2_I029 Y
ypt2601 Y
ypt2606 C
ypt2608 C
ypt2615 Y
ypt2622 Y
ypt2623 C
ypt2624 C
ypt2625 Y
ypt2627 Y
ypt2628 C
ypt2629 Y
ypt262_L3_I030 Y
ypt2630 Y
ypt2636 Y
ypt2638 C
ypt263_L3_I031 Y
ypt2640 Y
ypt2641 Y
ypt2643 C
ypt2644 Y
ypt2646 Y
ypt264_L3_I032 Y
ypt2650 Y
ypt2653 C
ypt2656 Y
ypt2657 Y
ypt2658 C
ypt2661 C
ypt2664 C
ypt2665 Y
ypt2669 Y
ypt2670 Y
ypt2671 Y
ypt2672 Y
ypt2673 Y
ypt2678 Y
ypt2706 Y
ypt2722 C
ypt2724 Y
ypt2729 Y
ypt2733 C
ypt2739 Y
ypt2740 Y
ypt2745 Y
ypt2746 Y
ypt2760 Y
ypt2761 Y
ypt2765 Y
ypt2766 C
ypt2775 Y
ypt2780 Y
ypt2781 Y
ypt2782 Y
ypt2783 C
ypt2784 C
ypt2785 Y
ypt2786 Y
ypt2787 Y
ypt2788 Y
ypt2789 C
ypt2790 C
ypt2791 C
ypt2792 Y
ypt2799 Y
ypt2800 C
ypt2808 Y
ypt2810 Y
ypt2812 Y
ypt2813 C
ypt2814 Y
ypt2815 T
ypt2816 C
ypt2817 Y
ypt2819 Y
ypt2821 Y
ypt2822 Y
ypt2823 Y
ypt2824 Y
ypt2825 Y
ypt2826 Y
ypt2827 Y
ypt2828 Y
ypt2831 C
ypt2832 Y
ypt2842 Y
ypt2843 Y
ypt2849 Y
ypt2859 Y
ypt2860 Y
ypt2861 Y
ypt2862 Y
ypt2863 Y
ypt2870 Y
ypt2871 T
ypt2887 C
ypt2888 T
ypt2889 Y
ypt2890_L3_I040 T
ypt2891_L3_I041 Y
ypt2892 Y
ypt2893_L3_I025 Y
ypt2894 Y
ypt2895_L3_I026 Y
ypt2902 C
ypt2909 Y
ypt2910 Y
ypt2911 C
ypt2912 Y
ypt2918 C
ypt2929 Y
ypt2930 Y
ypt3001 C
ypt3002 Y
ypt3003 Y
ypt3004 Y
ypt3005 C
ypt3006 Y
ypt3007 Y
ypt3008 Y
ypt3009 C
ypt3010 C
ypt3011 Y
ypt3012 Y
ypt3016 Y
ypt3017 Y
ypt3028 Y
ypt3038 Y
ypt3040 Y
ypt3041 C
ypt3042 Y
ypt3043 C
ypt3044 Y
ypt3045 C
ypt3046 Y
ypt3047 Y
ypt3050 C
ypt3051 C
ypt3052 C
ypt3061 C
ypt3069 C
ypt3072 C
ypt3133 C
ypt3134 C
ypt3135 Y
ypt3136 C
ypt3137 C
ypt3138 Y
ypt3139 Y
ypt3140 C
ypt3141 C
ypt3142 Y
ypt3143 C
ypt3144_L3_I039 C
ypt3145 C
ypt3146 Y
ypt3149_L2_I034 Y
ypt3150_L8_I023 C
ypt3159_L6_I035 C
ypt3160_L8_I024 C
ypt3162_L6_I036 C
ypt3179_L8_I025 C
ypt3180 C
ypt3181_L7_I038 C
ypt3182_L1_I039 Y
ypt3189_L1_I040 C
ypt3190_L8_I026 C
ypt3191_L2_I041 C
ypt3193_L1_I027 C
ypt3195_L1_I042 C
ypt3196_L2_I043 C
ypt3197_L1_I044 C
ypt3204_L7_I046 Y
ypt3205_L2_I047 Y
ypt3206_L1_I048 C
ypt3207_L6_I050 C
ypt3210_L6_I051 C
ypt3211_L6_I052 Y
ypt3212_L4_I028 C
ypt3213_L8_I029 C
ypt3219_L1_I030 C
ypt3220_L1_I031 Y
ypt3221_L1_I032 C
ypt3222_L1_I033 Y
ypt3224_L8_I043 Y
ypt3225_L2_I053 T
ypt3226_L3_I044 C
ypt3228-7_L1_I034 Y
ypt3229_L8_I045 C
ypt3238_L3_I046 C
ypt3239_L1_I035 C
ypt3241_L6_I055 C
ypt3243_L8_I047 Y
ypt3245 Y
ypt3246_L6_I050 C
ypt3247_L6_I051 C
ypt3257_L1_I056 C
ypt3259_L6_I002 C
ypt3260_L6_I003 C
ypt3261_L7_I004 C
ypt3262_L7_I005 Y
ypt3269_L7_I006 Y
ypt3270_L1_I007 C
ypt3271_L7_I008 C
ypt3272_L7_I010 C
ypt3274A_L7_I011 C
ypt3275_L1_I012 C
ypt3277_L6_I027 C
ypt3278_L3_I028 C
ypt3289_L8_I021 C
ypt4001 C
ypt47_L2_I029 C
ypt50_L2_I030 Y
ypt55_L1_I033 C
ypt890 Y
ypt891 C
ypt896_L2_I047 C
ypt897_L3_I048 C
ypt898 C
ypt899_L6_I051 C
ypt900_L2_I050 C
ypt901_L1_I052 C
ypt902_L1_I053 C
ypt903_L2_I054 C
ypt904_L4_I055 Y
ypt905_L6_I056 C
ypt906_L3_I001 C
ypt907_L6_I002 Y
ypt908_L1_I003 Y
ypt909_L5_I004 C
ypt910_L3_I005 C
ypt911_L6_I006 C
ypt912 C
ypt913 T
ypt916 C
ypt917 C
ypt918_L3_I007 C
ypt919_L4_I008 C
ypt920_L5_I010 C
ypt922_L4_I012 C
ypt923_L2_I051 C
ypt924_L3_I021 C
ypt925_L2_I022 Y
ypt928 C
ypt929 C
ypt930 C
ypt931 Y
ypt932 C
ypt933 C
ypt935 C
ypt936 C
ypt937 C
ypt938x C
ypt939_L5_I025 C
ypt940_L4_I026 C
ypt941_L5_I027 C
ypt942_L7_I028 C
ypt943 C
ypt944_L3_I030 C
ypt945_L4_I031 C
ypt946_L4_I032 C
ypt947_L5_I033 C
ypt948_L2_I034 C
ypt949_L3_I035 C
ypt950_L5_I036 C
ypt951 C
ypt952 C
ypt953 C
ypt954 C
ypt955 C
ypt956x C
ypt957 C
ypt958 C
ypt959 C
ypt960 C
ypt961 C
ypt962 C
ypt963 C
ypt964 C
ypt965 C
ypt966 C
ypt971 C
ypt972x C
ypt973_L4_I037 Y
ypt974 C
ypt975_L8_I039 C
ypt976_L7_I040 C
ypt977_L2_I041 C
ypt978_L2_I052 C
ypt979_L6_I042 C
ypt980_L3_I043 C
ypt981_L2_I044 C
ypt982_L4_I045 C
ypt984 C
yptwj C
147209 C
147830 C
GLF_denovo C
Gallus_Sonneriatii_d C
Ypt4000 C
Ypt4879 C
Ypt4880 C