ChickenSD

ChickenSD / Individual SNP / ggaS0005003646078

Detail information of ggaS0005003646078

1.General Information

SNP ID: ggaS0005003646078
Organism: Gallus gallus
Individual: 104S_L7_I029

2.Allele information

Platform: SOLEXA
Method: sequence
SNP Class: SNP
Genotype: C

3.Reference Map information

Chrom Position Reference 104S_L7_I029
chr5 803 T C

4.Gene information

Var ID Gene ID Transcript ID Gene Symbol Variant Effect Biotype cDNA Position Allele Change Protein ID Protein Position Residue Change
ggaS0005003646078 ENSGALG00000024035 - upstream_gene_variant => =>

5.Individual Genotype

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Individual Genotype
100S T
101S_L1_I028 Y
102S_L3_I037 T
103S C
105S_L3_I039 Y
106S_L6_I030 T
107S_L2_I031 T
108S_L6_I032 T
109S_L5_I033 T
10S_L1_I052 C
110S_L4_I034 T
111S_L3_I047 T
112S_L3_I035 C
113S_L1_I036 T
114S_L3_I037 T
116S_L6_I038 T
117S_L2_I039 T
118S_L4_I040 T
119S_L3_I041 T
11S Y
120S_L1_I041 T
121S_L3_I042 T
123S_L4_I044 T
124S_L2_I048 T
125S_L3_I050 Y
126S_L3_I051 Y
127S_L2_I045 T
128S_L1_I042 T
129S_L3_I043 T
12S_L4_I011 C
130S_L4_I044 Y
131S_L2_I045 Y
132S_L2_I046 Y
133S_L8_I046 T
134S_L2_I047 T
135S_L3_I048 T
13S_L7_I012 T
14S_L2_I021 T
15S_L6_I022 C
16S_L5_I023 T
17S_L3_I024 Y
18833 C
18S_L7_I025 Y
19297 Y
19912 T
19S_L4_I026 T
1S T
20736 Y
21S_L6_I028 T
22S_L6_I029 C
23S_L2_I030 T
24S_L4_I031 T
25S_L3_I032 T
26S T
27S_L4_I034 Y
28S_L4_I035 T
29S_L3_I036 T
2S T
30S_L2_I037 T
31S_L3_I038 Y
32S_L1_I039 C
33S T
35S_L5_I041 C
36S_L5_I042 Y
37S_L2_I043 Y
38S_L6_I044 C
39S_L6_I053 T
40S_L2_I054 T
41S_L5_I045 Y
42S_L3_I055 T
43S T
44S_L4_I001 T
45S_L2_I002 T
46S_L4_I003 T
47S_L3_I046 T
48S_L1_I004 T
49S_L1_I005 Y
4S_L4_I004 T
50S_L1_I047 T
51S_L6_I048 T
53S_L2_I006 T
54S_L2_I007 T
55S_L1_I008 Y
56S_L1_I010 T
57S_L3_I046 Y
58S_L4_I051 C
59S_L5_I052 T
5S T
60S_L5_I053 T
61S_L8_I054 T
62S_L8_I055 C
63S_L5_I056 T
64S_L4_I001 C
65S_L5_I002 T
66S_L2_I003 C
67S_L1_I011 C
68S_L3_I012 Y
69S T
6S T
70S T
71S_L3_I023 T
72S_L1_I024 C
73S_L1_I025 T
74S_L4_I026 Y
75S_L3_I027 T
77S_L4_I029 Y
78S_L4_I030 Y
79S_L2_I031 T
7S_L4_I007 T
80S_L3_I004 T
81S_L1_I005 Y
82S T
83S_L3_I033 T
84S_L5_I006 T
85S_L5_I007 C
86S_L5_I008 Y
87S_L5_I010 Y
88S_L4_I011 C
89S_L6_I012 C
90S_L4_I021 T
91S_L4_I022 C
92S_L5_I023 T
93S_L7_I024 C
95S_L8_I025 C
96S_L4_I026 T
97S_L8_I027 T
98S_L3_I034 Y
99S_L2_I035 T
9S T
A1 T
A10 T
A12 T
A14 T
A3 T
A8 Y
BKL2 T
BLB2_L2_I008 C
BLO11 C
GVF C
India1 T
India11 T
India13 T
India15 T
India17 Y
India19 T
India21 T
India23 T
India27 T
India29 Y
India31 C
India33 T
India35 T
India37 T
India39 T
India41 C
India45 T
India47 C
India5 T
India51 T
India55 T
India59 T
India61 T
India7 Y
India9 T
L2 T
N1 T
N11 T
N13 T
N18 C
N3 T
N5 T
N7 T
N8 T
S-f1_L4_I106 T
S-f2_I107 T
S-f3_I108 T
S-f4_L4_I109 T
S-m1_I101 T
S-m2_I102 T
S-m3_I103 T
S-m4_L2_I104 T
S-m5_I105 T
S6 T
SAMN02486156 T
SAMN02486157 T
SAMN02486158 T
SAMN02486159 T
SAMN02486160 Y
SAMN02486161 T
SAMN02486163 T
SAMN02486164 C
SAMN02486165 T
SAMN02486166 T
SAMN02486167 C
Silkia T
T2 Y
T3 T
T5 T
TD1 T
TD12 T
TD15 T
TD22 T
TD27 T
TD30 T
TD6 C
TD9 T
Tibet Y
Xcelris_10 T
Xcelris_101 T
Xcelris_104 T
Xcelris_105 Y
Xcelris_10B T
Xcelris_112 T
Xcelris_113 T
Xcelris_114 T
Xcelris_12 T
Xcelris_120 T
Xcelris_128 T
Xcelris_129 T
Xcelris_12A T
Xcelris_13 T
Xcelris_13B T
Xcelris_14 T
Xcelris_141 T
Xcelris_142 C
Xcelris_143 T
Xcelris_144 T
Xcelris_14A T
Xcelris_14B T
Xcelris_176 T
Xcelris_1A T
Xcelris_219 T
Xcelris_221 T
Xcelris_222 T
Xcelris_224 T
Xcelris_226 T
Xcelris_227 T
Xcelris_275 T
Xcelris_278 T
Xcelris_279 T
Xcelris_280 T
Xcelris_2B T
Xcelris_3 T
Xcelris_331 T
Xcelris_332 T
Xcelris_335 T
Xcelris_336 T
Xcelris_340 T
Xcelris_36 T
Xcelris_377 T
Xcelris_378 T
Xcelris_379 T
Xcelris_380 T
Xcelris_381 T
Xcelris_382 T
Xcelris_383 T
Xcelris_384 T
Xcelris_44 T
Xcelris_5B T
Xcelris_67 T
Xcelris_6A T
Xcelris_6B Y
Xcelris_77 T
Xcelris_84 T
Xcelris_8A Y
Xcelris_8B T
Xcelris_90 T
Xcelris_97 C
Xcelris_98 T
Xcelris_MT-134 T
Xcelris_MT-46 T
Xcelris_MT-48 T
Y1-f1_L5_I119 T
Y1-f2_L6_I121 T
Y1-f3_L7_I101 T
Y1-m1_L6_I120 T
Y1-m2_L4_I122 T
Y1-m3_L7_I123 T
Y1-m4_I124 Y
Y1-m5_L7_I102 T
YPt565 Y
YPt601 T
YPt610 Y
YPt637 T
YPt641 Y
YPt648 T
You1 T
You3_L7_I1000005 T
Ypt566 T
Ypt567 Y
Ypt568 Y
Ypt569 T
Ypt570 Y
Ypt571 C
Ypt572 T
Ypt573 T
Ypt574 C
Ypt575 T
Ypt576 Y
Ypt577 Y
Ypt578 Y
Ypt579 T
Ypt580 T
Ypt581 T
Ypt582 C
Ypt583 T
Ypt584 T
Ypt585 T
Ypt586 C
Ypt587 T
Ypt588 T
Ypt589 T
Ypt590 T
Ypt591 T
Ypt592 T
Ypt593 T
Ypt594 T
Ypt595 T
Ypt596 T
Ypt597 T
Ypt598 T
Ypt599 T
Ypt600 T
Ypt602 T
Ypt603 T
Ypt606 Y
Ypt607 T
Ypt608 Y
Ypt622 T
Ypt623 C
Ypt624 T
Ypt626 T
Ypt638 Y
Ypt640 T
Ypt643 T
Ypt645 T
Ypt646 Y
Ypt647 T
Yt516 C
Yt517 T
Yt518 T
Yt519 T
Yt520 T
Yt521 Y
Yt522 Y
Yt523 Y
Yt524 T
Yt525 T
Yt526 Y
Yt527 Y
Yt528 T
Yt529 Y
Yt530 T
Yt531 T
Yt536 Y
Yt538 Y
Yt539 T
Yt540 T
ZJ1 T
ZJ2 T
ZJ3 T
ZJ4 T
india3 T
india49 Y
production T
yp914ypt T
ypt169_L3_I011 T
ypt170_L2_I012 T
ypt171_L2_I021 T
ypt173_L2_I022 T
ypt175_L2_I023 T
ypt2043_L1_I037 T
ypt2051_L3_I003 T
ypt2053_L6_I004 C
ypt2063_L6_I005 T
ypt2069_L6_I006 C
ypt2071_L1_I038 T
ypt2082 T
ypt2086 T
ypt2087 T
ypt2091 T
ypt2092 T
ypt2093 T
ypt2094 T
ypt2095 T
ypt2098 T
ypt2100 T
ypt2101 T
ypt2102 T
ypt2103 T
ypt2105 T
ypt2106 T
ypt2107 T
ypt2108 Y
ypt2109 Y
ypt2110 T
ypt2111 T
ypt2112 T
ypt2114 T
ypt2115 T
ypt2116 T
ypt2118 T
ypt2119 T
ypt2121 T
ypt2122 Y
ypt2124_L4_I052 Y
ypt2126_L3_I053 C
ypt2128_L6_I054 T
ypt2145_L6_I056 T
ypt2146_L6_I001 C
ypt2163 T
ypt2164 T
ypt2165 Y
ypt2166 T
ypt2167 T
ypt2168 T
ypt2169 T
ypt2170 T
ypt2171 Y
ypt2172 T
ypt2173 T
ypt2175 C
ypt2176 C
ypt2177 Y
ypt2178 T
ypt217_L2_I024 Y
ypt2184 Y
ypt2185 T
ypt2186 T
ypt2187 Y
ypt2189 C
ypt2190 T
ypt2191 T
ypt219_L3_I025 T
ypt2200 T
ypt2201 Y
ypt2205 T
ypt2209 Y
ypt220_L2_I026 T
ypt2214 C
ypt2215 C
ypt2216 C
ypt2217 T
ypt2218 C
ypt2219 T
ypt221_L3_I042 T
ypt2220 Y
ypt2221 T
ypt2222 C
ypt222_L3_I027 T
ypt2437 Y
ypt2438 T
ypt2439 T
ypt2440 T
ypt2441 T
ypt2442 C
ypt2443 T
ypt2444 T
ypt2445 C
ypt2446 T
ypt2447 T
ypt2448 T
ypt2449 T
ypt2454 T
ypt2459 T
ypt2468 Y
ypt2496 T
ypt2497 T
ypt2499 T
ypt2500 T
ypt2503 Y
ypt2504 Y
ypt2507 T
ypt2512 T
ypt2516 T
ypt2521 C
ypt2523 Y
ypt2534 Y
ypt2541 Y
ypt2543 T
ypt2544 T
ypt2545 T
ypt2546 T
ypt2547 T
ypt2552 C
ypt2562 T
ypt2563 Y
ypt2569 C
ypt2570 Y
ypt2571 Y
ypt2572 T
ypt2573 T
ypt2574 T
ypt2575 Y
ypt258_L3_I028 T
ypt2598 C
ypt259_L2_I029 T
ypt2601 T
ypt2606 T
ypt2608 T
ypt2615 Y
ypt2622 T
ypt2623 T
ypt2624 T
ypt2625 T
ypt2627 Y
ypt2628 C
ypt2629 T
ypt262_L3_I030 C
ypt2630 Y
ypt2636 Y
ypt2638 C
ypt263_L3_I031 T
ypt2641 T
ypt2643 Y
ypt2644 T
ypt2646 T
ypt264_L3_I032 T
ypt2650 T
ypt2653 T
ypt2656 T
ypt2657 T
ypt2658 Y
ypt2661 T
ypt2664 T
ypt2665 T
ypt2670 T
ypt2671 T
ypt2672 Y
ypt2673 T
ypt2678 Y
ypt2706 C
ypt2722 T
ypt2724 T
ypt2729 T
ypt2733 T
ypt2739 C
ypt2740 T
ypt2745 C
ypt2746 T
ypt2760 C
ypt2761 C
ypt2765 Y
ypt2766 T
ypt2775 T
ypt2780 T
ypt2781 T
ypt2782 C
ypt2783 T
ypt2784 Y
ypt2785 T
ypt2787 Y
ypt2788 Y
ypt2789 T
ypt2790 T
ypt2791 T
ypt2792 Y
ypt2799 T
ypt2800 T
ypt2808 T
ypt2810 C
ypt2812 Y
ypt2813 Y
ypt2814 C
ypt2815 C
ypt2816 T
ypt2817 C
ypt2819 T
ypt2821 C
ypt2822 C
ypt2823 T
ypt2824 T
ypt2825 Y
ypt2826 T
ypt2827 T
ypt2828 T
ypt2831 T
ypt2832 T
ypt2842 T
ypt2843 T
ypt2849 Y
ypt2859 T
ypt2861 C
ypt2863 C
ypt2891_L3_I041 C
ypt2892 T
ypt2893_L3_I025 T
ypt2894 T
ypt2895_L3_I026 T
ypt2902 Y
ypt2909 T
ypt2910 T
ypt2911 T
ypt2918 T
ypt2929 Y
ypt2930 C
ypt3001 T
ypt3002 T
ypt3003 T
ypt3004 T
ypt3005 C
ypt3007 T
ypt3008 C
ypt3009 T
ypt3010 T
ypt3011 T
ypt3016 T
ypt3017 T
ypt3028 Y
ypt3038 T
ypt3040 T
ypt3041 T
ypt3042 T
ypt3043 T
ypt3044 C
ypt3045 T
ypt3046 T
ypt3047 T
ypt3050 T
ypt3051 T
ypt3052 T
ypt3061 T
ypt3069 T
ypt3072 T
ypt3133 T
ypt3134 T
ypt3135 T
ypt3136 T
ypt3137 T
ypt3138 T
ypt3139 T
ypt3140 T
ypt3141 T
ypt3142 Y
ypt3143 T
ypt3145 T
ypt3146 C
ypt3149_L2_I034 T
ypt3150_L8_I023 T
ypt3159_L6_I035 C
ypt3160_L8_I024 T
ypt3162_L6_I036 Y
ypt3179_L8_I025 T
ypt3180 T
ypt3181_L7_I038 T
ypt3182_L1_I039 T
ypt3189_L1_I040 T
ypt3190_L8_I026 T
ypt3191_L2_I041 T
ypt3193_L1_I027 T
ypt3195_L1_I042 C
ypt3196_L2_I043 T
ypt3197_L1_I044 Y
ypt3198_L2_I045 T
ypt3204_L7_I046 T
ypt3205_L2_I047 T
ypt3206_L1_I048 Y
ypt3210_L6_I051 T
ypt3211_L6_I052 T
ypt3212_L4_I028 T
ypt3213_L8_I029 T
ypt3220_L1_I031 T
ypt3221_L1_I032 T
ypt3224_L8_I043 T
ypt3225_L2_I053 T
ypt3226_L3_I044 T
ypt3228-7_L1_I034 T
ypt3238_L3_I046 T
ypt3239_L1_I035 T
ypt3240_L6_I054 T
ypt3241_L6_I055 C
ypt3243_L8_I047 T
ypt3245 T
ypt3246_L6_I050 T
ypt3247_L6_I051 T
ypt3259_L6_I002 T
ypt3260_L6_I003 T
ypt3262_L7_I005 T
ypt3269_L7_I006 T
ypt3270_L1_I007 T
ypt3271_L7_I008 T
ypt3272_L7_I010 T
ypt3274A_L7_I011 T
ypt3275_L1_I012 T
ypt3277_L6_I027 T
ypt3278_L3_I028 T
ypt3289_L8_I021 T
ypt50_L2_I030 T
ypt51_L2_I031 T
ypt53_L2_I032 T
ypt55_L1_I033 T
ypt891 T
ypt896_L2_I047 T
ypt898 T
ypt900_L2_I050 T
ypt901_L1_I052 T
ypt902_L1_I053 T
ypt903_L2_I054 T
ypt904_L4_I055 T
ypt905_L6_I056 T
ypt906_L3_I001 T
ypt907_L6_I002 T
ypt908_L1_I003 T
ypt912 T
ypt918_L3_I007 T
ypt919_L4_I008 T
ypt920_L5_I010 T
ypt921_L8_I011 Y
ypt923_L2_I051 T
ypt925_L2_I022 T
ypt926_L2_I023 Y
ypt928 T
ypt929 T
ypt930 C
ypt931 T
ypt932 T
ypt935 T
ypt936 T
ypt941_L5_I027 T
ypt942_L7_I028 T
ypt943 T
ypt944_L3_I030 T
ypt945_L4_I031 T
ypt946_L4_I032 T
ypt947_L5_I033 Y
ypt948_L2_I034 T
ypt949_L3_I035 Y
ypt950_L5_I036 T
ypt953 Y
ypt954 T
ypt955 Y
ypt956x T
ypt957 T
ypt958 T
ypt959 T
ypt960 Y
ypt961 Y
ypt962 T
ypt963 Y
ypt964 C
ypt965 T
ypt966 T
ypt971 C
ypt972x T
ypt973_L4_I037 Y
ypt974 Y
ypt975_L8_I039 Y
ypt976_L7_I040 T
ypt977_L2_I041 T
ypt978_L2_I052 T
ypt979_L6_I042 C
ypt980_L3_I043 T
ypt981_L2_I044 T
ypt982_L4_I045 T
ypt984 C
yptwj T
147209 T
147830 T
GLF_denovo T
Gallus_Sonneriatii_d T
Ypt4000 T
Ypt4879 T
Ypt4880 T