ChickenSD

ChickenSD / Individual SNP / ggaS0005001168340

Detail information of ggaS0005001168340

1.General Information

SNP ID: ggaS0005001168340
Organism: Gallus gallus
Individual: 104S_L7_I029

2.Allele information

Platform: SOLEXA
Method: sequence
SNP Class: SNP
Genotype: T

3.Reference Map information

Chrom Position Reference 104S_L7_I029
chr12 14500 C T

4.Gene information

Var ID Gene ID Transcript ID Gene Symbol Variant Effect Biotype cDNA Position Allele Change Protein ID Protein Position Residue Change
ggaS0005001168340 ENSGALG00000014148 - intron_variant => =>

5.Individual Genotype

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Individual Genotype
100S C
101S_L1_I028 C
102S_L3_I037 Y
103S C
105S_L3_I039 Y
106S_L6_I030 C
107S_L2_I031 Y
108S_L6_I032 Y
109S_L5_I033 Y
10S_L1_I052 Y
110S_L4_I034 C
111S_L3_I047 Y
112S_L3_I035 C
113S_L1_I036 C
114S_L3_I037 C
116S_L6_I038 Y
117S_L2_I039 C
118S_L4_I040 Y
119S_L3_I041 C
11S T
120S_L1_I041 C
121S_L3_I042 Y
122S_L4_I043 Y
123S_L4_I044 Y
124S_L2_I048 Y
125S_L3_I050 Y
126S_L3_I051 C
127S_L2_I045 Y
128S_L1_I042 Y
129S_L3_I043 Y
12S_L4_I011 Y
130S_L4_I044 C
131S_L2_I045 Y
132S_L2_I046 C
133S_L8_I046 C
134S_L2_I047 Y
135S_L3_I048 Y
13S_L7_I012 Y
14S_L2_I021 Y
15S_L6_I022 C
16S_L5_I023 Y
17S_L3_I024 Y
18833 Y
18S_L7_I025 Y
19297 Y
19912 Y
19S_L4_I026 Y
1S Y
20736 Y
20S_L7_I027 C
21S_L6_I028 Y
22S_L6_I029 C
23S_L2_I030 C
24S_L4_I031 Y
25S_L3_I032 Y
26S C
27S_L4_I034 Y
28S_L4_I035 C
29S_L3_I036 Y
2S C
30S_L2_I037 C
31S_L3_I038 Y
32S_L1_I039 C
33S C
35S_L5_I041 Y
36S_L5_I042 Y
37S_L2_I043 C
38S_L6_I044 C
39S_L6_I053 Y
3S_L4_I003 Y
40S_L2_I054 Y
41S_L5_I045 Y
42S_L3_I055 Y
43S Y
44S_L4_I001 Y
45S_L2_I002 Y
46S_L4_I003 Y
47S_L3_I046 C
48S_L1_I004 Y
49S_L1_I005 C
4S_L4_I004 Y
50S_L1_I047 Y
51S_L6_I048 C
52S_L2_I050 C
53S_L2_I006 Y
54S_L2_I007 Y
55S_L1_I008 Y
56S_L1_I010 C
57S_L3_I046 Y
58S_L4_I051 Y
59S_L5_I052 Y
5S Y
60S_L5_I053 C
61S_L8_I054 C
62S_L8_I055 C
63S_L5_I056 Y
64S_L4_I001 Y
65S_L5_I002 C
66S_L2_I003 Y
67S_L1_I011 Y
68S_L3_I012 Y
69S Y
6S Y
70S Y
71S_L3_I023 Y
72S_L1_I024 Y
73S_L1_I025 C
74S_L4_I026 Y
75S_L3_I027 Y
76S_L1_I028 C
77S_L4_I029 Y
78S_L4_I030 Y
79S_L2_I031 Y
7S_L4_I007 Y
80S_L3_I004 C
81S_L1_I005 Y
82S Y
83S_L3_I033 Y
84S_L5_I006 Y
85S_L5_I007 Y
86S_L5_I008 Y
87S_L5_I010 Y
88S_L4_I011 Y
89S_L6_I012 Y
90S_L4_I021 Y
91S_L4_I022 Y
92S_L5_I023 Y
93S_L7_I024 Y
95S_L8_I025 Y
96S_L4_I026 C
97S_L8_I027 Y
98S_L3_I034 C
99S_L2_I035 C
9S Y
A1 Y
A10 C
A12 Y
A14 C
A3 C
A8 Y
BKL2 C
BLB1_L2_I007 T
BLB2_L2_I008 T
BLO1 T
BLO11 T
BLO15 T
BLO2 T
BLO3_L4_I022 T
BOJA2 T
BYW3_L3_I033 T
BYW5_L2_I010 T
GVF T
India1 C
India11 Y
India13 Y
India15 Y
India17 C
India19 C
India21 Y
India23 Y
India25 Y
India27 Y
India29 Y
India31 Y
India33 C
India35 Y
India37 Y
India39 C
India41 Y
India43 C
India45 C
India47 C
India5 Y
India51 Y
India55 T
India57 C
India59 Y
India61 Y
India7 Y
India9 C
L2 Y
N1 C
N11 C
N13 C
N18 C
N3 Y
N5 Y
N7 C
N8 C
S-f1_L4_I106 Y
S-f2_I107 C
S-f3_I108 C
S-f4_L4_I109 C
S-m1_I101 Y
S-m2_I102 C
S-m3_I103 C
S-m4_L2_I104 Y
S-m5_I105 C
S6 Y
SAMN02486156 C
SAMN02486157 C
SAMN02486158 C
SAMN02486159 C
SAMN02486160 C
SAMN02486161 Y
SAMN02486162 C
SAMN02486163 C
SAMN02486164 Y
SAMN02486165 C
SAMN02486166 C
SAMN02486167 C
Silkia C
T2 C
T3 C
T5 Y
TD1 C
TD12 C
TD15 C
TD22 Y
TD27 C
TD30 C
TD6 Y
TD9 Y
Tibet C
Xcelris_10 Y
Xcelris_101 C
Xcelris_104 Y
Xcelris_105 Y
Xcelris_10A Y
Xcelris_10B Y
Xcelris_112 C
Xcelris_113 Y
Xcelris_114 Y
Xcelris_11B C
Xcelris_12 Y
Xcelris_127 C
Xcelris_128 C
Xcelris_129 C
Xcelris_12A Y
Xcelris_13 Y
Xcelris_137 C
Xcelris_13B C
Xcelris_14 C
Xcelris_141 C
Xcelris_143 Y
Xcelris_144 C
Xcelris_14A Y
Xcelris_14B Y
Xcelris_174 C
Xcelris_175 C
Xcelris_176 C
Xcelris_219 C
Xcelris_221 C
Xcelris_222 C
Xcelris_224 C
Xcelris_226 C
Xcelris_227 C
Xcelris_276 T
Xcelris_278 C
Xcelris_279 T
Xcelris_280 C
Xcelris_2A C
Xcelris_3 C
Xcelris_331 C
Xcelris_332 C
Xcelris_333 C
Xcelris_335 C
Xcelris_336 C
Xcelris_339 C
Xcelris_340 C
Xcelris_341 C
Xcelris_377 C
Xcelris_378 C
Xcelris_379 C
Xcelris_381 C
Xcelris_382 C
Xcelris_383 C
Xcelris_384 C
Xcelris_385 C
Xcelris_392 C
Xcelris_394 C
Xcelris_44 C
Xcelris_4A C
Xcelris_4B C
Xcelris_5 T
Xcelris_5A C
Xcelris_5B Y
Xcelris_67 C
Xcelris_6A C
Xcelris_7 Y
Xcelris_77 Y
Xcelris_8 Y
Xcelris_84 C
Xcelris_8B C
Xcelris_90 C
Xcelris_97 C
Xcelris_98 Y
Xcelris_MT-134 C
Xcelris_MT-18 C
Xcelris_MT-38 C
Xcelris_MT-46 C
Xcelris_MT-85 C
Xcelris_MT-9 C
Y1-f1_L5_I119 Y
Y1-f2_L6_I121 C
Y1-f3_L7_I101 C
Y1-m1_L6_I120 C
Y1-m2_L4_I122 C
Y1-m3_L7_I123 Y
Y1-m4_I124 C
Y1-m5_L7_I102 Y
YPt565 C
YPt601 C
YPt604 C
YPt609 C
YPt610 C
YPt637 C
YPt641 C
YPt648 Y
You1 C
You3_L7_I1000005 Y
Ypt566 C
Ypt567 T
Ypt568 C
Ypt569 C
Ypt570 C
Ypt571 C
Ypt572 C
Ypt573 Y
Ypt574 C
Ypt575 C
Ypt576 C
Ypt577 C
Ypt578 C
Ypt579 C
Ypt580 C
Ypt581 C
Ypt582 T
Ypt583 C
Ypt584 C
Ypt585 C
Ypt586 C
Ypt587 C
Ypt588 C
Ypt589 C
Ypt590 C
Ypt591 C
Ypt592 C
Ypt593 C
Ypt594 C
Ypt595 C
Ypt596 C
Ypt597 C
Ypt598 C
Ypt599 C
Ypt600 C
Ypt602 C
Ypt603 C
Ypt606 C
Ypt607 C
Ypt608 Y
Ypt623 C
Ypt624 C
Ypt626 C
Ypt638 C
Ypt640 Y
Ypt643 T
Ypt645 C
Yt516 Y
Yt517 C
Yt518 C
Yt519 Y
Yt520 Y
Yt521 C
Yt522 C
Yt523 C
Yt524 C
Yt525 Y
Yt526 C
Yt527 C
Yt528 C
Yt529 C
Yt530 C
Yt531 C
Yt536 C
Yt538 C
Yt539 C
Yt540 Y
ZJ1 Y
ZJ2 C
ZJ3 C
ZJ4 C
india3 C
india49 C
production C
yp914ypt C
ypt170_L2_I012 C
ypt171_L2_I021 C
ypt173_L2_I022 C
ypt175_L2_I023 C
ypt2041_L6_I002 Y
ypt2043_L1_I037 Y
ypt2051_L3_I003 C
ypt2053_L6_I004 C
ypt2063_L6_I005 C
ypt2069_L6_I006 C
ypt2071_L1_I038 Y
ypt2082 Y
ypt2086 C
ypt2087 Y
ypt2091 Y
ypt2092 C
ypt2093 Y
ypt2094 Y
ypt2095 Y
ypt2098 Y
ypt2100 Y
ypt2101 Y
ypt2102 C
ypt2103 Y
ypt2105 Y
ypt2106 C
ypt2107 Y
ypt2108 Y
ypt2109 Y
ypt2110 Y
ypt2111 C
ypt2112 C
ypt2114 C
ypt2115 Y
ypt2116 Y
ypt2117 Y
ypt2118 Y
ypt2119 C
ypt2120 C
ypt2121 Y
ypt2122 Y
ypt2124_L4_I052 C
ypt2126_L3_I053 C
ypt2127_L1_I036 Y
ypt2128_L6_I054 C
ypt2144_L6_I055 Y
ypt2145_L6_I056 Y
ypt2146_L6_I001 Y
ypt2163 C
ypt2164 Y
ypt2165 C
ypt2166 C
ypt2167 C
ypt2168 C
ypt2169 Y
ypt2170 C
ypt2171 Y
ypt2172 Y
ypt2173 C
ypt2174 Y
ypt2175 C
ypt2176 C
ypt2177 Y
ypt2178 C
ypt217_L2_I024 Y
ypt2184 C
ypt2185 C
ypt2186 Y
ypt2187 C
ypt2189 C
ypt2190 C
ypt2191 C
ypt219_L3_I025 Y
ypt2200 C
ypt2201 C
ypt2205 Y
ypt2209 Y
ypt220_L2_I026 Y
ypt2214 Y
ypt2215 Y
ypt2216 Y
ypt2217 Y
ypt2218 C
ypt2219 C
ypt221_L3_I042 C
ypt2220 C
ypt2221 Y
ypt2222 C
ypt222_L3_I027 C
ypt2437 Y
ypt2438 C
ypt2439 Y
ypt2440 Y
ypt2441 Y
ypt2442 Y
ypt2443 C
ypt2444 Y
ypt2445 C
ypt2446 C
ypt2447 C
ypt2448 Y
ypt2449 C
ypt2454 Y
ypt2459 C
ypt2468 T
ypt2496 C
ypt2497 Y
ypt2498 Y
ypt2499 Y
ypt2500 Y
ypt2503 Y
ypt2504 C
ypt2507 Y
ypt2512 Y
ypt2516 Y
ypt2521 Y
ypt2523 C
ypt2534 Y
ypt2541 C
ypt2543 C
ypt2544 Y
ypt2545 Y
ypt2546 Y
ypt2547 Y
ypt2552 C
ypt2562 Y
ypt2563 Y
ypt2569 Y
ypt2570 Y
ypt2571 Y
ypt2572 Y
ypt2573 Y
ypt2574 Y
ypt2575 Y
ypt2579 C
ypt258_L3_I028 Y
ypt2598 C
ypt259_L2_I029 C
ypt2601 Y
ypt2606 Y
ypt2608 C
ypt2615 Y
ypt2622 C
ypt2623 Y
ypt2624 C
ypt2625 C
ypt2627 Y
ypt2628 C
ypt2629 C
ypt262_L3_I030 Y
ypt2630 Y
ypt2636 C
ypt2638 C
ypt263_L3_I031 Y
ypt2640 Y
ypt2641 Y
ypt2643 Y
ypt2644 Y
ypt2646 Y
ypt264_L3_I032 Y
ypt2650 Y
ypt2653 Y
ypt2656 C
ypt2657 Y
ypt2658 C
ypt2661 Y
ypt2664 Y
ypt2665 C
ypt2669 C
ypt2670 Y
ypt2671 Y
ypt2672 Y
ypt2673 C
ypt2678 Y
ypt2706 Y
ypt2722 Y
ypt2724 Y
ypt2729 C
ypt2733 C
ypt2739 C
ypt2740 Y
ypt2745 Y
ypt2746 C
ypt2760 Y
ypt2761 Y
ypt2765 Y
ypt2766 Y
ypt2775 Y
ypt2780 Y
ypt2781 Y
ypt2782 Y
ypt2783 C
ypt2784 Y
ypt2785 Y
ypt2786 C
ypt2787 Y
ypt2788 Y
ypt2789 Y
ypt2790 Y
ypt2791 C
ypt2792 Y
ypt2799 Y
ypt2800 Y
ypt2808 Y
ypt2810 Y
ypt2812 Y
ypt2813 Y
ypt2814 Y
ypt2815 Y
ypt2816 Y
ypt2817 Y
ypt2819 Y
ypt2821 Y
ypt2822 Y
ypt2823 C
ypt2824 Y
ypt2825 C
ypt2826 C
ypt2827 Y
ypt2828 Y
ypt2831 C
ypt2832 Y
ypt2842 C
ypt2843 C
ypt2849 Y
ypt2859 C
ypt2860 T
ypt2861 T
ypt2862 T
ypt2863 T
ypt2870 T
ypt2871 T
ypt2887 T
ypt2888 T
ypt2889 T
ypt2890_L3_I040 T
ypt2891_L3_I041 T
ypt2892 C
ypt2893_L3_I025 Y
ypt2894 Y
ypt2895_L3_I026 Y
ypt2902 C
ypt2909 C
ypt2910 Y
ypt2911 Y
ypt2912 Y
ypt2918 Y
ypt2929 Y
ypt2930 Y
ypt3001 C
ypt3002 Y
ypt3003 Y
ypt3004 C
ypt3005 Y
ypt3006 C
ypt3007 C
ypt3008 C
ypt3009 Y
ypt3010 Y
ypt3011 T
ypt3012 C
ypt3016 Y
ypt3017 Y
ypt3028 Y
ypt3038 C
ypt3040 Y
ypt3041 C
ypt3042 C
ypt3043 C
ypt3044 C
ypt3045 Y
ypt3046 Y
ypt3047 C
ypt3050 C
ypt3051 Y
ypt3052 C
ypt3061 C
ypt3069 C
ypt3072 Y
ypt3133 C
ypt3134 C
ypt3135 Y
ypt3136 C
ypt3137 Y
ypt3138 C
ypt3139 C
ypt3140 C
ypt3141 C
ypt3142 C
ypt3143 Y
ypt3144_L3_I039 C
ypt3145 C
ypt3146 Y
ypt3149_L2_I034 C
ypt3150_L8_I023 C
ypt3159_L6_I035 C
ypt3160_L8_I024 C
ypt3162_L6_I036 C
ypt3179_L8_I025 C
ypt3180 Y
ypt3181_L7_I038 C
ypt3182_L1_I039 C
ypt3189_L1_I040 C
ypt3190_L8_I026 Y
ypt3191_L2_I041 C
ypt3193_L1_I027 C
ypt3195_L1_I042 Y
ypt3196_L2_I043 Y
ypt3197_L1_I044 C
ypt3198_L2_I045 Y
ypt3204_L7_I046 C
ypt3205_L2_I047 Y
ypt3206_L1_I048 Y
ypt3207_L6_I050 Y
ypt3210_L6_I051 Y
ypt3211_L6_I052 C
ypt3212_L4_I028 Y
ypt3213_L8_I029 Y
ypt3219_L1_I030 C
ypt3220_L1_I031 Y
ypt3222_L1_I033 C
ypt3224_L8_I043 C
ypt3225_L2_I053 C
ypt3226_L3_I044 Y
ypt3228-7_L1_I034 Y
ypt3229_L8_I045 C
ypt3238_L3_I046 C
ypt3239_L1_I035 C
ypt3240_L6_I054 C
ypt3243_L8_I047 Y
ypt3245 C
ypt3246_L6_I050 Y
ypt3247_L6_I051 Y
ypt3257_L1_I056 C
ypt3258_L3_I001 C
ypt3259_L6_I002 C
ypt3262_L7_I005 C
ypt3269_L7_I006 C
ypt3270_L1_I007 C
ypt3271_L7_I008 C
ypt3272_L7_I010 C
ypt3274A_L7_I011 C
ypt3276_L7_I021 T
ypt3277_L6_I027 C
ypt3278_L3_I028 T
ypt3289_L8_I021 C
ypt47_L2_I029 C
ypt51_L2_I031 C
ypt53_L2_I032 C
ypt55_L1_I033 C
ypt890 C
ypt891 C
ypt896_L2_I047 C
ypt897_L3_I048 C
ypt898 C
ypt899_L6_I051 C
ypt901_L1_I052 C
ypt902_L1_I053 C
ypt903_L2_I054 C
ypt905_L6_I056 C
ypt906_L3_I001 C
ypt907_L6_I002 C
ypt908_L1_I003 C
ypt909_L5_I004 C
ypt910_L3_I005 C
ypt911_L6_I006 C
ypt912 C
ypt913 C
ypt915 C
ypt916 T
ypt917 C
ypt918_L3_I007 Y
ypt919_L4_I008 C
ypt920_L5_I010 C
ypt922_L4_I012 Y
ypt923_L2_I051 Y
ypt924_L3_I021 Y
ypt925_L2_I022 C
ypt928 C
ypt929 C
ypt930 C
ypt931 Y
ypt932 C
ypt933 C
ypt934x C
ypt935 C
ypt938x C
ypt939_L5_I025 C
ypt941_L5_I027 Y
ypt942_L7_I028 C
ypt943 C
ypt944_L3_I030 C
ypt945_L4_I031 C
ypt946_L4_I032 Y
ypt947_L5_I033 C
ypt948_L2_I034 Y
ypt949_L3_I035 C
ypt950_L5_I036 C
ypt951 C
ypt952 C
ypt953 C
ypt954 C
ypt955 C
ypt956x Y
ypt957 C
ypt958 Y
ypt959 C
ypt960 T
ypt961 C
ypt962 C
ypt963 C
ypt964 C
ypt965 C
ypt966 Y
ypt971 C
ypt972x C
ypt973_L4_I037 C
ypt974 C
ypt975_L8_I039 C
ypt976_L7_I040 C
ypt977_L2_I041 C
ypt978_L2_I052 C
ypt979_L6_I042 T
ypt980_L3_I043 C
ypt981_L2_I044 C
ypt982_L4_I045 C
ypt984 C
yptwj C
147209 C
147830 C
GLF_denovo C
Gallus_Sonneriatii_d C
Ypt4000 C
Ypt4879 C
Ypt4880 C