ChickenSD

ChickenSD / Individual SNP / ggaS0001004394927

Detail information of ggaS0001004394927

1.General Information

SNP ID: ggaS0001004394927
Organism: Gallus gallus
Individual: 100S

2.Allele information

Platform: SOLEXA
Method: sequence
SNP Class: SNP
Genotype: T

3.Reference Map information

Chrom Position Reference 100S
chrW 15608 C T

4.Gene information

Var ID Gene ID Transcript ID Gene Symbol Variant Effect Biotype cDNA Position Allele Change Protein ID Protein Position Residue Change
ggaS0001004394927 - intergenic_variant => =>

5.Individual Genotype

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Individual Genotype
101S_L1_I028 C
106S_L6_I030 C
10S_L1_I052 C
110S_L4_I034 Y
113S_L1_I036 C
114S_L3_I037 C
116S_L6_I038 C
118S_L4_I040 C
119S_L3_I041 C
11S C
120S_L1_I041 C
121S_L3_I042 C
122S_L4_I043 C
123S_L4_I044 C
124S_L2_I048 C
125S_L3_I050 C
126S_L3_I051 C
127S_L2_I045 C
128S_L1_I042 C
130S_L4_I044 C
131S_L2_I045 C
133S_L8_I046 C
18833 C
19912 C
19S_L4_I026 C
1S C
20S_L7_I027 C
25S_L3_I032 C
26S C
27S_L4_I034 C
28S_L4_I035 C
29S_L3_I036 C
2S C
35S_L5_I041 C
36S_L5_I042 C
37S_L2_I043 C
38S_L6_I044 C
3S_L4_I003 C
41S_L5_I045 C
42S_L3_I055 C
43S C
47S_L3_I046 C
48S_L1_I004 C
49S_L1_I005 T
4S_L4_I004 Y
51S_L6_I048 C
52S_L2_I050 C
55S_L1_I008 C
56S_L1_I010 C
5S C
60S_L5_I053 C
61S_L8_I054 C
62S_L8_I055 C
63S_L5_I056 C
67S_L1_I011 C
68S_L3_I012 C
69S C
70S C
71S_L3_I023 C
75S_L3_I027 C
76S_L1_I028 C
77S_L4_I029 T
78S_L4_I030 T
80S_L3_I004 C
81S_L1_I005 Y
82S C
83S_L3_I033 Y
84S_L5_I006 C
85S_L5_I007 C
87S_L5_I010 Y
88S_L4_I011 C
89S_L6_I012 C
90S_L4_I021 C
92S_L5_I023 C
93S_L7_I024 C
95S_L8_I025 C
96S_L4_I026 C
99S_L2_I035 C
9S C
A10 C
A12 C
A14 C
A3 T
A8 T
BLB1_L2_I007 T
BLO1 C
BLO2 C
BLO3_L4_I022 C
BOJA2 Y
GVF C
India15 C
India23 C
India29 T
India31 C
India37 C
India39 C
India41 C
India43 T
India45 C
India47 T
India5 C
India7 C
L2 C
N1 C
N11 C
N18 C
N3 C
N5 C
N8 T
S-f2_I107 C
S-f3_I108 C
S-f4_L4_I109 Y
S-m4_L2_I104 T
SAMN02486156 C
SAMN02486158 C
SAMN02486159 C
SAMN02486160 C
SAMN02486161 C
SAMN02486162 C
SAMN02486163 C
SAMN02486164 C
SAMN02486165 C
SAMN02486166 C
SAMN02486167 C
T5 C
TD22 C
TD27 C
TD30 C
TD6 C
Tibet C
Xcelris_127 C
Xcelris_12A C
Xcelris_137 C
Xcelris_13B C
Xcelris_141 C
Xcelris_142 C
Xcelris_143 C
Xcelris_144 C
Xcelris_14A C
Xcelris_14B C
Xcelris_221 C
Xcelris_222 C
Xcelris_226 C
Xcelris_280 C
Xcelris_282 C
Xcelris_332 C
Xcelris_335 C
Xcelris_336 C
Xcelris_377 C
Xcelris_379 C
Xcelris_385 C
Xcelris_392 C
Xcelris_4B C
Xcelris_5A C
Xcelris_8B C
Xcelris_98 Y
Xcelris_MT-48 C
Xcelris_MT-85 C
Y1-f1_L5_I119 C
Y1-f2_L6_I121 Y
Y1-f3_L7_I101 C
Y1-m2_L4_I122 T
Y1-m4_I124 T
YPt601 C
YPt604 C
YPt610 C
YPt637 C
YPt641 C
YPt648 C
You1 T
You3_L7_I1000005 Y
Ypt566 C
Ypt570 C
Ypt572 C
Ypt573 C
Ypt574 C
Ypt577 C
Ypt579 C
Ypt580 C
Ypt582 C
Ypt583 C
Ypt586 C
Ypt587 C
Ypt589 C
Ypt591 C
Ypt592 C
Ypt595 C
Ypt598 C
Ypt599 C
Ypt602 C
Ypt603 C
Ypt606 C
Ypt607 C
Ypt623 C
Ypt624 C
Ypt626 C
Ypt638 C
Ypt640 C
Ypt642 C
Yt517 C
Yt519 C
Yt520 C
Yt521 C
Yt525 C
Yt527 C
Yt529 C
Yt539 C
ZJ4 C
india3 C
production C
ypt170_L2_I012 C
ypt2043_L1_I037 T
ypt2051_L3_I003 C
ypt2053_L6_I004 C
ypt2063_L6_I005 C
ypt2071_L1_I038 C
ypt2086 C
ypt2094 T
ypt2095 C
ypt2100 C
ypt2102 C
ypt2107 C
ypt2109 C
ypt2110 C
ypt2112 C
ypt2114 C
ypt2115 C
ypt2119 C
ypt2120 C
ypt2121 C
ypt2124_L4_I052 Y
ypt2126_L3_I053 C
ypt2127_L1_I036 Y
ypt2145_L6_I056 C
ypt2146_L6_I001 C
ypt2163 T
ypt2167 C
ypt2168 Y
ypt2175 C
ypt2176 C
ypt2177 C
ypt2178 C
ypt217_L2_I024 C
ypt2184 C
ypt2185 C
ypt2186 C
ypt2187 Y
ypt2191 C
ypt2200 C
ypt2201 Y
ypt2205 C
ypt2209 C
ypt2214 T
ypt2220 C
ypt2438 C
ypt2442 C
ypt2443 Y
ypt2446 C
ypt2447 C
ypt2448 C
ypt2454 C
ypt2459 C
ypt2468 C
ypt2496 C
ypt2497 C
ypt2498 C
ypt2499 C
ypt2500 C
ypt2503 C
ypt2504 C
ypt2507 C
ypt2512 C
ypt2523 C
ypt2534 C
ypt2543 C
ypt2569 C
ypt2572 C
ypt2573 C
ypt2574 C
ypt2579 C
ypt2606 C
ypt2608 C
ypt2615 C
ypt2622 C
ypt2623 C
ypt2624 C
ypt262_L3_I030 C
ypt2630 C
ypt2636 C
ypt2638 C
ypt2640 C
ypt2643 C
ypt2644 C
ypt2646 C
ypt2656 C
ypt2657 C
ypt2658 T
ypt2661 Y
ypt2665 C
ypt2669 C
ypt2672 C
ypt2673 C
ypt2724 C
ypt2729 C
ypt2733 C
ypt2739 C
ypt2740 C
ypt2761 C
ypt2765 C
ypt2766 C
ypt2780 C
ypt2781 C
ypt2785 C
ypt2786 C
ypt2787 T
ypt2788 T
ypt2791 C
ypt2792 Y
ypt2799 C
ypt2800 Y
ypt2808 C
ypt2810 C
ypt2813 Y
ypt2814 C
ypt2815 C
ypt2816 C
ypt2819 C
ypt2821 C
ypt2822 C
ypt2823 C
ypt2826 C
ypt2827 C
ypt2831 C
ypt2832 C
ypt2842 C
ypt2843 T
ypt2849 T
ypt2860 T
ypt2862 C
ypt2871 C
ypt2887 C
ypt2888 Y
ypt2891_L3_I041 C
ypt2895_L3_I026 C
ypt2911 C
ypt2929 T
ypt2930 C
ypt3003 C
ypt3004 C
ypt3005 C
ypt3006 T
ypt3007 C
ypt3008 T
ypt3009 C
ypt3028 C
ypt3040 C
ypt3041 C
ypt3042 C
ypt3044 C
ypt3045 C
ypt3046 C
ypt3050 T
ypt3052 C
ypt3061 C
ypt3069 Y
ypt3135 T
ypt3138 C
ypt3140 C
ypt3141 C
ypt3142 C
ypt3143 C
ypt3144_L3_I039 C
ypt3145 C
ypt3146 C
ypt3149_L2_I034 C
ypt3150_L8_I023 C
ypt3159_L6_I035 C
ypt3180 C
ypt3190_L8_I026 C
ypt3191_L2_I041 C
ypt3193_L1_I027 C
ypt3195_L1_I042 C
ypt3197_L1_I044 C
ypt3222_L1_I033 C
ypt3226_L3_I044 C
ypt3229_L8_I045 C
ypt3238_L3_I046 C
ypt3240_L6_I054 C
ypt3241_L6_I055 C
ypt3243_L8_I047 C
ypt3245 C
ypt3246_L6_I050 C
ypt3247_L6_I051 C
ypt3269_L7_I006 C
ypt3270_L1_I007 C
ypt3272_L7_I010 C
ypt3289_L8_I021 C
ypt4001 C
ypt55_L1_I033 C
ypt891 C
ypt896_L2_I047 C
ypt901_L1_I052 C
ypt903_L2_I054 C
ypt909_L5_I004 C
ypt910_L3_I005 C
ypt915 C
ypt917 C
ypt928 C
ypt931 Y
ypt936 C
ypt938x C
ypt941_L5_I027 C
ypt942_L7_I028 Y
ypt943 C
ypt945_L4_I031 T
ypt947_L5_I033 T
ypt950_L5_I036 C
ypt951 C
ypt953 C
ypt954 C
ypt955 C
ypt956x C
ypt957 T
ypt958 Y
ypt959 C
ypt963 C
ypt965 C
ypt966 C
ypt971 C
ypt974 C
ypt976_L7_I040 C
ypt977_L2_I041 C
ypt979_L6_I042 C
ypt980_L3_I043 C
ypt984 C
yptwj C
147830 C
Gallus_Sonneriatii_d C
Ypt4000 C