ggaS0001001418554

Detail information of ggaS0001001418554

1.General Information

SNP ID:	ggaS0001001418554
Organism:	Gallus gallus
Individual:	100S

2.Allele information

Platform:	SOLEXA
Method:	sequence
SNP Class:	SNP
Genotype:	G

3.Reference Map information

Chrom	Position	Reference	100S
chr16	3162	T	G

4.Gene information

Var ID	Gene ID	Gene Symbol	Variant Effect	Allele Change	Residue Change
ggaS0001001418554	ENSGALG00000027865	CD1.2	upstream_gene_variant	=>	=>
ggaS0001001418554	ENSGALG00000012494	CD1A1	intron_variant	=>	=>
ggaS0001001418554	ENSGALG00000012494	CD1A1	intron_variant	=>	=>

5.Individual Genotype

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Individual	Genotype
101S_L1_I028	T
102S_L3_I037	T
103S	T
104S_L7_I029	K
105S_L3_I039	T
106S_L6_I030	K
107S_L2_I031	G
108S_L6_I032	K
109S_L5_I033	T
10S_L1_I052	K
110S_L4_I034	G
111S_L3_I047	T
112S_L3_I035	T
113S_L1_I036	T
114S_L3_I037	T
116S_L6_I038	K
117S_L2_I039	G
118S_L4_I040	G
119S_L3_I041	T
11S	T
120S_L1_I041	T
121S_L3_I042	T
122S_L4_I043	T
123S_L4_I044	T
124S_L2_I048	T
125S_L3_I050	T
126S_L3_I051	T
127S_L2_I045	T
128S_L1_I042	T
129S_L3_I043	T
12S_L4_I011	K
130S_L4_I044	K
131S_L2_I045	K
132S_L2_I046	K
133S_L8_I046	T
134S_L2_I047	T
135S_L3_I048	T
14S_L2_I021	T
15S_L6_I022	T
16S_L5_I023	K
17S_L3_I024	T
18833	T
18S_L7_I025	T
19297	K
19912	G
19S_L4_I026	T
1S	T
20736	T
20S_L7_I027	T
21S_L6_I028	K
22S_L6_I029	K
23S_L2_I030	T
24S_L4_I031	T
25S_L3_I032	K
26S	T
27S_L4_I034	G
28S_L4_I035	T
29S_L3_I036	T
2S	G
30S_L2_I037	T
31S_L3_I038	K
32S_L1_I039	T
33S	T
35S_L5_I041	G
36S_L5_I042	K
37S_L2_I043	K
38S_L6_I044	K
39S_L6_I053	K
3S_L4_I003	G
40S_L2_I054	G
41S_L5_I045	T
42S_L3_I055	K
43S	T
44S_L4_I001	T
45S_L2_I002	G
46S_L4_I003	T
47S_L3_I046	K
48S_L1_I004	K
49S_L1_I005	T
4S_L4_I004	K
50S_L1_I047	T
52S_L2_I050	K
53S_L2_I006	K
54S_L2_I007	T
55S_L1_I008	K
56S_L1_I010	K
57S_L3_I046	K
58S_L4_I051	T
59S_L5_I052	T
5S	K
60S_L5_I053	K
61S_L8_I054	T
62S_L8_I055	T
63S_L5_I056	T
64S_L4_I001	T
65S_L5_I002	K
66S_L2_I003	K
67S_L1_I011	T
68S_L3_I012	K
69S	T
6S	G
70S	K
71S_L3_I023	K
72S_L1_I024	T
73S_L1_I025	G
74S_L4_I026	G
75S_L3_I027	K
76S_L1_I028	T
77S_L4_I029	K
78S_L4_I030	K
79S_L2_I031	K
7S_L4_I007	K
80S_L3_I004	G
81S_L1_I005	K
82S	K
83S_L3_I033	T
84S_L5_I006	T
85S_L5_I007	T
86S_L5_I008	T
87S_L5_I010	T
88S_L4_I011	T
89S_L6_I012	T
90S_L4_I021	T
91S_L4_I022	T
92S_L5_I023	T
93S_L7_I024	T
95S_L8_I025	T
96S_L4_I026	T
97S_L8_I027	T
98S_L3_I034	T
99S_L2_I035	T
9S	T
A1	T
A10	T
A12	T
A14	K
A3	T
A8	K
BKL2	K
BLB1_L2_I007	T
BLO1	K
BLO11	G
BLO15	K
BLO2	T
BLO3_L4_I022	T
BOJA2	K
GVF	K
India1	T
India11	K
India13	K
India15	K
India17	K
India19	T
India21	T
India23	T
India25	K
India27	K
India29	T
India31	T
India33	T
India35	G
India39	G
India41	G
India43	T
India45	K
India47	K
India5	K
India51	G
India55	T
India57	K
India59	T
India61	K
India7	T
India9	K
L2	T
N1	K
N11	T
N13	T
N18	K
N3	T
N5	T
N7	T
N8	T
S-f1_L4_I106	T
S-f2_I107	K
S-f3_I108	T
S-f4_L4_I109	T
S-m1_I101	T
S-m2_I102	K
S-m3_I103	T
S-m4_L2_I104	T
S-m5_I105	K
S6	T
SAMN02486156	T
SAMN02486157	G
SAMN02486158	T
SAMN02486159	T
SAMN02486160	T
SAMN02486161	T
SAMN02486162	G
SAMN02486163	K
SAMN02486164	K
SAMN02486165	T
SAMN02486166	T
SAMN02486167	T
Silkia	T
T2	T
T3	T
T5	T
TD1	T
TD12	T
TD15	K
TD22	T
TD27	K
TD30	G
TD6	K
TD9	K
Tibet	T
Xcelris_101	G
Xcelris_104	T
Xcelris_105	K
Xcelris_10A	G
Xcelris_10B	T
Xcelris_112	K
Xcelris_113	G
Xcelris_114	G
Xcelris_11B	T
Xcelris_12	T
Xcelris_120	T
Xcelris_127	T
Xcelris_128	T
Xcelris_13	T
Xcelris_137	T
Xcelris_14	T
Xcelris_14A	T
Xcelris_14B	T
Xcelris_174	T
Xcelris_176	T
Xcelris_1A	K
Xcelris_1B	T
Xcelris_219	T
Xcelris_221	T
Xcelris_222	T
Xcelris_224	T
Xcelris_226	T
Xcelris_227	T
Xcelris_278	T
Xcelris_2A	T
Xcelris_3	G
Xcelris_331	T
Xcelris_332	T
Xcelris_333	T
Xcelris_335	T
Xcelris_336	T
Xcelris_340	T
Xcelris_341	T
Xcelris_378	T
Xcelris_380	T
Xcelris_382	T
Xcelris_383	T
Xcelris_384	T
Xcelris_385	T
Xcelris_392	T
Xcelris_44	T
Xcelris_4B	T
Xcelris_5A	T
Xcelris_5B	T
Xcelris_67	T
Xcelris_6A	T
Xcelris_6B	T
Xcelris_7	G
Xcelris_77	K
Xcelris_84	T
Xcelris_8A	T
Xcelris_90	T
Xcelris_98	T
Xcelris_MT-6	G
Y1-f1_L5_I119	K
Y1-f2_L6_I121	T
Y1-f3_L7_I101	K
Y1-m1_L6_I120	T
Y1-m2_L4_I122	T
Y1-m3_L7_I123	T
Y1-m4_I124	T
Y1-m5_L7_I102	T
YPt565	K
YPt601	T
YPt604	T
YPt609	T
YPt610	K
YPt637	T
YPt641	T
YPt648	T
You1	T
You3_L7_I1000005	K
Ypt566	T
Ypt567	T
Ypt568	T
Ypt569	T
Ypt570	T
Ypt571	T
Ypt572	T
Ypt573	T
Ypt574	T
Ypt575	T
Ypt576	K
Ypt577	T
Ypt578	T
Ypt579	K
Ypt580	K
Ypt581	T
Ypt582	T
Ypt583	K
Ypt584	T
Ypt585	K
Ypt586	T
Ypt587	T
Ypt588	T
Ypt589	T
Ypt590	T
Ypt591	T
Ypt592	T
Ypt593	T
Ypt594	T
Ypt595	T
Ypt596	T
Ypt597	T
Ypt598	T
Ypt599	T
Ypt600	T
Ypt602	T
Ypt603	G
Ypt606	K
Ypt607	K
Ypt608	K
Ypt622	T
Ypt623	K
Ypt624	G
Ypt626	K
Ypt638	T
Ypt640	K
Ypt642	T
Ypt643	G
Ypt645	T
Ypt646	T
Ypt647	G
Yt516	K
Yt517	T
Yt518	G
Yt519	K
Yt520	K
Yt521	T
Yt522	G
Yt523	G
Yt524	T
Yt525	K
Yt526	K
Yt527	K
Yt528	K
Yt529	T
Yt530	T
Yt531	K
Yt536	T
Yt538	T
Yt539	K
Yt540	T
ZJ1	T
ZJ2	T
ZJ3	K
ZJ4	G
india3	G
india49	T
production	T
yp914ypt	G
ypt169_L3_I011	T
ypt170_L2_I012	T
ypt171_L2_I021	T
ypt173_L2_I022	T
ypt175_L2_I023	T
ypt2041_L6_I002	T
ypt2043_L1_I037	G
ypt2051_L3_I003	K
ypt2053_L6_I004	G
ypt2063_L6_I005	T
ypt2069_L6_I006	G
ypt2071_L1_I038	T
ypt2082	K
ypt2086	K
ypt2087	G
ypt2091	K
ypt2092	T
ypt2093	T
ypt2094	T
ypt2095	T
ypt2098	G
ypt2100	T
ypt2101	T
ypt2102	T
ypt2103	T
ypt2105	T
ypt2106	T
ypt2107	K
ypt2109	T
ypt2110	T
ypt2111	T
ypt2112	T
ypt2114	T
ypt2115	T
ypt2116	T
ypt2117	G
ypt2118	G
ypt2119	T
ypt2120	G
ypt2121	T
ypt2122	T
ypt2124_L4_I052	K
ypt2126_L3_I053	G
ypt2127_L1_I036	T
ypt2128_L6_I054	T
ypt2144_L6_I055	T
ypt2145_L6_I056	T
ypt2146_L6_I001	K
ypt2163	K
ypt2164	T
ypt2165	K
ypt2166	G
ypt2167	K
ypt2168	K
ypt2169	T
ypt2170	K
ypt2171	T
ypt2172	T
ypt2173	T
ypt2174	T
ypt2175	T
ypt2176	K
ypt2177	K
ypt2178	K
ypt217_L2_I024	T
ypt2184	K
ypt2185	T
ypt2186	T
ypt2187	K
ypt2189	T
ypt2190	T
ypt2191	T
ypt219_L3_I025	T
ypt2200	T
ypt2201	K
ypt2205	K
ypt2209	T
ypt220_L2_I026	K
ypt2214	G
ypt2215	T
ypt2216	G
ypt2217	K
ypt2218	K
ypt2219	T
ypt221_L3_I042	G
ypt2220	T
ypt2221	T
ypt2222	T
ypt222_L3_I027	K
ypt2437	T
ypt2438	K
ypt2439	G
ypt2440	K
ypt2441	T
ypt2442	K
ypt2443	G
ypt2444	T
ypt2445	T
ypt2446	T
ypt2447	T
ypt2448	K
ypt2449	G
ypt2454	G
ypt2459	T
ypt2468	T
ypt2496	T
ypt2497	T
ypt2498	T
ypt2499	T
ypt2500	T
ypt2503	T
ypt2504	T
ypt2507	T
ypt2512	T
ypt2516	T
ypt2521	K
ypt2523	K
ypt2534	K
ypt2541	K
ypt2543	T
ypt2544	T
ypt2545	T
ypt2547	T
ypt2552	T
ypt2562	K
ypt2563	T
ypt2569	T
ypt2570	T
ypt2571	K
ypt2572	G
ypt2573	T
ypt2574	T
ypt2575	T
ypt2579	T
ypt258_L3_I028	K
ypt2598	K
ypt259_L2_I029	T
ypt2601	T
ypt2606	K
ypt2608	T
ypt2615	G
ypt2622	T
ypt2623	T
ypt2624	G
ypt2625	T
ypt2627	K
ypt2628	T
ypt2629	T
ypt262_L3_I030	G
ypt2630	K
ypt2636	K
ypt2638	K
ypt263_L3_I031	K
ypt2640	G
ypt2641	G
ypt2643	T
ypt2644	K
ypt2646	T
ypt264_L3_I032	T
ypt2650	G
ypt2653	T
ypt2656	K
ypt2657	K
ypt2658	T
ypt2661	K
ypt2664	T
ypt2669	K
ypt2670	K
ypt2671	T
ypt2672	K
ypt2673	K
ypt2678	K
ypt2706	T
ypt2722	T
ypt2724	K
ypt2729	K
ypt2733	T
ypt2739	T
ypt2740	T
ypt2745	T
ypt2746	K
ypt2760	K
ypt2761	T
ypt2765	K
ypt2766	T
ypt2775	G
ypt2780	K
ypt2781	K
ypt2782	T
ypt2783	G
ypt2784	G
ypt2785	K
ypt2786	T
ypt2787	K
ypt2788	K
ypt2789	K
ypt2790	K
ypt2791	G
ypt2792	K
ypt2799	K
ypt2800	T
ypt2808	T
ypt2810	T
ypt2812	T
ypt2813	T
ypt2814	T
ypt2815	T
ypt2816	T
ypt2817	T
ypt2819	T
ypt2821	T
ypt2822	T
ypt2823	T
ypt2824	T
ypt2825	T
ypt2826	T
ypt2827	T
ypt2828	T
ypt2831	T
ypt2832	T
ypt2842	K
ypt2843	T
ypt2849	K
ypt2859	K
ypt2860	T
ypt2862	K
ypt2863	G
ypt2870	K
ypt2871	T
ypt2887	T
ypt2888	K
ypt2891_L3_I041	K
ypt2892	T
ypt2893_L3_I025	K
ypt2894	K
ypt2895_L3_I026	K
ypt2902	K
ypt2909	T
ypt2910	T
ypt2911	T
ypt2912	K
ypt2918	K
ypt2929	T
ypt2930	T
ypt3001	T
ypt3002	G
ypt3004	G
ypt3005	G
ypt3006	T
ypt3007	K
ypt3008	K
ypt3009	K
ypt3010	G
ypt3011	T
ypt3012	K
ypt3016	T
ypt3017	K
ypt3028	T
ypt3038	K
ypt3040	T
ypt3041	K
ypt3042	T
ypt3043	T
ypt3044	K
ypt3045	T
ypt3046	T
ypt3047	T
ypt3050	T
ypt3051	T
ypt3052	K
ypt3061	T
ypt3069	T
ypt3072	T
ypt3133	K
ypt3134	T
ypt3135	T
ypt3136	K
ypt3137	T
ypt3138	T
ypt3139	G
ypt3140	T
ypt3141	T
ypt3142	T
ypt3143	T
ypt3144_L3_I039	G
ypt3145	K
ypt3146	K
ypt3149_L2_I034	T
ypt3150_L8_I023	T
ypt3159_L6_I035	T
ypt3160_L8_I024	T
ypt3162_L6_I036	T
ypt3179_L8_I025	T
ypt3180	T
ypt3181_L7_I038	T
ypt3182_L1_I039	T
ypt3189_L1_I040	K
ypt3190_L8_I026	T
ypt3191_L2_I041	K
ypt3193_L1_I027	G
ypt3195_L1_I042	K
ypt3196_L2_I043	K
ypt3197_L1_I044	T
ypt3204_L7_I046	G
ypt3205_L2_I047	T
ypt3206_L1_I048	K
ypt3207_L6_I050	G
ypt3210_L6_I051	T
ypt3211_L6_I052	K
ypt3212_L4_I028	G
ypt3213_L8_I029	G
ypt3219_L1_I030	T
ypt3220_L1_I031	T
ypt3221_L1_I032	T
ypt3222_L1_I033	T
ypt3224_L8_I043	T
ypt3228-7_L1_I034	T
ypt3229_L8_I045	T
ypt3239_L1_I035	T
ypt3246_L6_I050	T
ypt3247_L6_I051	T
ypt3257_L1_I056	T
ypt3259_L6_I002	T
ypt3260_L6_I003	K
ypt3261_L7_I004	T
ypt3262_L7_I005	T
ypt3269_L7_I006	T
ypt3270_L1_I007	T
ypt3271_L7_I008	T
ypt3272_L7_I010	T
ypt3274A_L7_I011	T
ypt3277_L6_I027	T
ypt47_L2_I029	T
ypt51_L2_I031	G
ypt53_L2_I032	T
ypt55_L1_I033	T
ypt890	T
ypt891	T
ypt896_L2_I047	T
ypt898	T
ypt899_L6_I051	T
ypt902_L1_I053	T
ypt904_L4_I055	T
ypt906_L3_I001	T
ypt907_L6_I002	T
ypt908_L1_I003	T
ypt909_L5_I004	T
ypt910_L3_I005	T
ypt912	T
ypt915	T
ypt917	T
ypt918_L3_I007	T
ypt919_L4_I008	T
ypt920_L5_I010	T
ypt921_L8_I011	T
ypt922_L4_I012	G
ypt923_L2_I051	K
ypt925_L2_I022	T
ypt926_L2_I023	T
ypt929	T
ypt931	T
ypt937	G
ypt941_L5_I027	K
ypt942_L7_I028	T
ypt943	K
ypt944_L3_I030	T
ypt945_L4_I031	T
ypt946_L4_I032	T
ypt947_L5_I033	T
ypt948_L2_I034	T
ypt949_L3_I035	K
ypt950_L5_I036	T
ypt951	T
ypt952	T
ypt953	K
ypt954	T
ypt955	T
ypt956x	T
ypt957	T
ypt958	K
ypt959	T
ypt960	T
ypt961	T
ypt962	T
ypt963	T
ypt964	T
ypt965	T
ypt966	T
ypt971	T
ypt972x	T
ypt973_L4_I037	K
ypt974	T
ypt975_L8_I039	T
ypt976_L7_I040	K
ypt977_L2_I041	K
ypt978_L2_I052	T
ypt979_L6_I042	T
ypt980_L3_I043	K
ypt981_L2_I044	T
ypt982_L4_I045	K
ypt984	T
yptwj	T
147209	T
147830	T
GLF_denovo	T
Gallus_Sonneriatii_d	T
Ypt4000	T
Ypt4879	T
Ypt4880	T