ChickenSD

ChickenSD / Individual SNP / ggaS0001001418551

Detail information of ggaS0001001418551

1.General Information

SNP ID: ggaS0001001418551
Organism: Gallus gallus
Individual: 100S

2.Allele information

Platform: SOLEXA
Method: sequence
SNP Class: SNP
Genotype: G

3.Reference Map information

Chrom Position Reference 100S
chr16 3127 A G

4.Gene information

Var ID Gene ID Transcript ID Gene Symbol Variant Effect Biotype cDNA Position Allele Change Protein ID Protein Position Residue Change
ggaS0001001418551 ENSGALG00000027865 CD1.2 upstream_gene_variant => =>
ggaS0001001418551 ENSGALG00000012494 CD1A1 intron_variant => =>
ggaS0001001418551 ENSGALG00000012494 CD1A1 intron_variant => =>

5.Individual Genotype

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Individual Genotype
101S_L1_I028 A
102S_L3_I037 A
103S A
104S_L7_I029 R
105S_L3_I039 G
106S_L6_I030 R
107S_L2_I031 G
108S_L6_I032 R
109S_L5_I033 G
10S_L1_I052 G
110S_L4_I034 G
111S_L3_I047 A
112S_L3_I035 R
113S_L1_I036 A
114S_L3_I037 A
116S_L6_I038 G
117S_L2_I039 R
119S_L3_I041 R
11S R
120S_L1_I041 A
121S_L3_I042 G
122S_L4_I043 A
123S_L4_I044 A
124S_L2_I048 A
125S_L3_I050 A
126S_L3_I051 R
127S_L2_I045 R
128S_L1_I042 A
129S_L3_I043 A
12S_L4_I011 R
130S_L4_I044 G
131S_L2_I045 R
132S_L2_I046 R
133S_L8_I046 A
134S_L2_I047 A
135S_L3_I048 A
14S_L2_I021 A
15S_L6_I022 A
16S_L5_I023 R
17S_L3_I024 R
18833 A
18S_L7_I025 A
19297 R
19912 G
19S_L4_I026 R
1S R
20736 R
20S_L7_I027 G
21S_L6_I028 R
22S_L6_I029 G
23S_L2_I030 A
24S_L4_I031 A
25S_L3_I032 R
26S A
27S_L4_I034 G
28S_L4_I035 A
29S_L3_I036 A
2S G
30S_L2_I037 R
31S_L3_I038 G
32S_L1_I039 A
33S A
35S_L5_I041 G
36S_L5_I042 R
37S_L2_I043 R
38S_L6_I044 R
39S_L6_I053 R
3S_L4_I003 G
40S_L2_I054 G
41S_L5_I045 R
42S_L3_I055 R
43S A
44S_L4_I001 R
45S_L2_I002 G
46S_L4_I003 R
47S_L3_I046 G
48S_L1_I004 G
49S_L1_I005 R
4S_L4_I004 G
50S_L1_I047 G
52S_L2_I050 R
53S_L2_I006 R
54S_L2_I007 R
55S_L1_I008 R
56S_L1_I010 R
57S_L3_I046 R
58S_L4_I051 A
59S_L5_I052 A
5S R
60S_L5_I053 R
61S_L8_I054 G
62S_L8_I055 G
63S_L5_I056 A
64S_L4_I001 A
65S_L5_I002 R
66S_L2_I003 G
67S_L1_I011 A
68S_L3_I012 R
69S A
6S G
70S R
71S_L3_I023 G
72S_L1_I024 G
73S_L1_I025 G
74S_L4_I026 G
75S_L3_I027 R
76S_L1_I028 A
77S_L4_I029 R
78S_L4_I030 R
79S_L2_I031 A
7S_L4_I007 R
80S_L3_I004 G
81S_L1_I005 G
82S G
83S_L3_I033 R
84S_L5_I006 R
85S_L5_I007 A
86S_L5_I008 G
87S_L5_I010 G
88S_L4_I011 G
89S_L6_I012 G
90S_L4_I021 G
91S_L4_I022 G
92S_L5_I023 G
93S_L7_I024 G
95S_L8_I025 R
96S_L4_I026 A
97S_L8_I027 A
98S_L3_I034 A
99S_L2_I035 A
9S R
A1 A
A10 A
A12 A
A14 R
A3 A
A8 R
BKL2 G
BLB1_L2_I007 G
BLO1 R
BLO11 G
BLO15 G
BLO2 A
BLO3_L4_I022 G
BOJA2 R
BYW3_L3_I033 A
GVF G
India1 G
India11 R
India13 G
India15 R
India17 G
India19 G
India21 G
India23 A
India25 R
India27 G
India29 R
India31 A
India33 A
India35 R
India37 R
India39 G
India41 G
India43 G
India45 G
India47 R
India5 R
India51 G
India55 R
India57 R
India59 A
India61 R
India7 R
India9 G
L2 A
N1 G
N11 A
N13 A
N18 R
N3 R
N5 A
N7 A
N8 A
S-f1_L4_I106 R
S-f2_I107 R
S-f3_I108 A
S-f4_L4_I109 A
S-m1_I101 G
S-m2_I102 G
S-m3_I103 A
S-m4_L2_I104 G
S-m5_I105 G
S6 R
SAMN02486156 A
SAMN02486157 G
SAMN02486158 G
SAMN02486159 G
SAMN02486160 A
SAMN02486161 G
SAMN02486162 G
SAMN02486163 G
SAMN02486164 R
SAMN02486165 A
SAMN02486166 G
SAMN02486167 A
Silkia A
T2 R
T3 R
T5 A
TD1 R
TD12 A
TD15 G
TD22 G
TD27 G
TD30 G
TD6 R
TD9 G
Tibet A
Xcelris_101 G
Xcelris_104 G
Xcelris_105 R
Xcelris_10A G
Xcelris_10B A
Xcelris_112 G
Xcelris_113 G
Xcelris_114 G
Xcelris_11B A
Xcelris_12 G
Xcelris_120 A
Xcelris_127 A
Xcelris_128 A
Xcelris_12A A
Xcelris_13 G
Xcelris_137 G
Xcelris_14 R
Xcelris_143 A
Xcelris_14A A
Xcelris_14B G
Xcelris_175 G
Xcelris_176 G
Xcelris_1A G
Xcelris_1B A
Xcelris_219 G
Xcelris_221 R
Xcelris_222 A
Xcelris_224 A
Xcelris_226 R
Xcelris_227 A
Xcelris_278 A
Xcelris_2A A
Xcelris_331 A
Xcelris_332 A
Xcelris_333 R
Xcelris_335 A
Xcelris_336 A
Xcelris_340 A
Xcelris_341 A
Xcelris_378 G
Xcelris_379 A
Xcelris_380 A
Xcelris_381 A
Xcelris_382 R
Xcelris_383 A
Xcelris_384 R
Xcelris_385 R
Xcelris_392 G
Xcelris_4A A
Xcelris_4B A
Xcelris_5A A
Xcelris_5B G
Xcelris_67 A
Xcelris_6A A
Xcelris_6B G
Xcelris_7 G
Xcelris_77 R
Xcelris_84 A
Xcelris_8A A
Xcelris_8B G
Xcelris_90 A
Xcelris_97 G
Xcelris_98 G
Xcelris_MT-6 G
Xcelris_MT-9 G
Y1-f1_L5_I119 R
Y1-f2_L6_I121 A
Y1-f3_L7_I101 R
Y1-m1_L6_I120 A
Y1-m2_L4_I122 R
Y1-m3_L7_I123 A
Y1-m4_I124 G
Y1-m5_L7_I102 A
YPt565 R
YPt601 A
YPt604 G
YPt609 A
YPt610 R
YPt637 R
YPt641 G
YPt648 A
You1 G
You3_L7_I1000005 R
Ypt566 R
Ypt567 A
Ypt568 A
Ypt569 A
Ypt570 R
Ypt572 A
Ypt573 A
Ypt575 R
Ypt576 R
Ypt577 G
Ypt578 A
Ypt579 R
Ypt580 R
Ypt581 A
Ypt582 R
Ypt583 R
Ypt584 A
Ypt585 R
Ypt586 A
Ypt587 A
Ypt588 A
Ypt589 A
Ypt590 A
Ypt591 A
Ypt592 A
Ypt593 A
Ypt594 A
Ypt595 A
Ypt596 A
Ypt597 A
Ypt598 A
Ypt599 A
Ypt600 A
Ypt602 A
Ypt603 R
Ypt606 G
Ypt607 G
Ypt608 R
Ypt622 R
Ypt623 R
Ypt624 G
Ypt626 G
Ypt638 R
Ypt640 G
Ypt642 A
Ypt643 G
Ypt645 A
Ypt646 R
Ypt647 G
Yt516 R
Yt517 G
Yt518 G
Yt519 R
Yt520 R
Yt521 R
Yt522 G
Yt523 R
Yt524 A
Yt525 G
Yt526 R
Yt527 R
Yt528 R
Yt529 A
Yt530 A
Yt531 G
Yt536 R
Yt538 A
Yt539 R
Yt540 R
ZJ1 A
ZJ2 A
ZJ3 R
ZJ4 G
india3 G
india49 R
production A
yp914ypt G
ypt169_L3_I011 A
ypt170_L2_I012 A
ypt171_L2_I021 A
ypt173_L2_I022 R
ypt175_L2_I023 A
ypt2041_L6_I002 A
ypt2043_L1_I037 G
ypt2051_L3_I003 R
ypt2053_L6_I004 G
ypt2063_L6_I005 A
ypt2069_L6_I006 G
ypt2071_L1_I038 A
ypt2082 R
ypt2086 A
ypt2087 R
ypt2091 R
ypt2092 A
ypt2093 A
ypt2094 A
ypt2095 A
ypt2098 G
ypt2100 A
ypt2101 A
ypt2102 A
ypt2103 G
ypt2105 G
ypt2106 R
ypt2107 R
ypt2108 A
ypt2109 G
ypt2110 G
ypt2111 A
ypt2112 R
ypt2114 G
ypt2115 R
ypt2116 A
ypt2117 A
ypt2118 G
ypt2119 R
ypt2120 G
ypt2121 G
ypt2124_L4_I052 R
ypt2126_L3_I053 G
ypt2127_L1_I036 R
ypt2128_L6_I054 R
ypt2144_L6_I055 G
ypt2145_L6_I056 R
ypt2146_L6_I001 R
ypt2163 R
ypt2164 R
ypt2165 R
ypt2166 G
ypt2167 R
ypt2168 A
ypt2169 R
ypt2170 R
ypt2171 A
ypt2172 R
ypt2173 R
ypt2174 R
ypt2175 A
ypt2176 G
ypt2177 G
ypt2178 A
ypt217_L2_I024 A
ypt2184 R
ypt2185 R
ypt2186 A
ypt2187 R
ypt2189 A
ypt2190 R
ypt2191 R
ypt219_L3_I025 G
ypt2200 A
ypt2201 R
ypt2205 R
ypt2209 R
ypt220_L2_I026 R
ypt2214 G
ypt2215 A
ypt2216 R
ypt2217 A
ypt2218 G
ypt2219 A
ypt221_L3_I042 G
ypt2220 A
ypt2221 A
ypt2222 A
ypt222_L3_I027 R
ypt2437 G
ypt2438 R
ypt2439 G
ypt2440 R
ypt2441 G
ypt2442 G
ypt2443 G
ypt2444 A
ypt2445 R
ypt2446 A
ypt2447 A
ypt2448 G
ypt2449 R
ypt2459 R
ypt2468 R
ypt2496 A
ypt2497 G
ypt2498 A
ypt2499 A
ypt2500 A
ypt2503 A
ypt2504 R
ypt2507 R
ypt2512 A
ypt2516 A
ypt2521 R
ypt2523 G
ypt2534 R
ypt2541 R
ypt2543 A
ypt2544 A
ypt2545 A
ypt2547 A
ypt2552 A
ypt2562 R
ypt2563 R
ypt2569 A
ypt2570 A
ypt2571 R
ypt2572 G
ypt2573 R
ypt2574 R
ypt2575 R
ypt2579 G
ypt258_L3_I028 R
ypt2598 G
ypt259_L2_I029 A
ypt2601 A
ypt2606 R
ypt2608 A
ypt2615 G
ypt2622 A
ypt2623 A
ypt2624 G
ypt2625 R
ypt2627 G
ypt2628 A
ypt2629 A
ypt262_L3_I030 G
ypt2630 R
ypt2636 R
ypt2638 R
ypt263_L3_I031 R
ypt2640 G
ypt2641 G
ypt2643 R
ypt2644 R
ypt2646 A
ypt264_L3_I032 R
ypt2650 G
ypt2653 R
ypt2656 G
ypt2657 G
ypt2658 R
ypt2661 G
ypt2664 G
ypt2669 R
ypt2670 R
ypt2671 R
ypt2672 R
ypt2673 R
ypt2678 R
ypt2706 A
ypt2722 A
ypt2724 R
ypt2729 R
ypt2733 G
ypt2739 G
ypt2740 A
ypt2745 A
ypt2746 R
ypt2760 G
ypt2761 A
ypt2765 R
ypt2766 A
ypt2775 G
ypt2780 R
ypt2781 G
ypt2782 G
ypt2783 G
ypt2784 G
ypt2785 R
ypt2786 A
ypt2787 R
ypt2788 R
ypt2789 A
ypt2790 R
ypt2791 G
ypt2792 G
ypt2799 G
ypt2800 R
ypt2808 R
ypt2810 A
ypt2812 G
ypt2813 G
ypt2814 G
ypt2815 G
ypt2816 G
ypt2817 G
ypt2819 G
ypt2821 G
ypt2822 R
ypt2823 A
ypt2824 A
ypt2825 A
ypt2826 A
ypt2827 R
ypt2828 A
ypt2831 A
ypt2832 A
ypt2842 R
ypt2843 A
ypt2849 R
ypt2859 G
ypt2860 G
ypt2862 R
ypt2863 G
ypt2870 G
ypt2871 A
ypt2887 G
ypt2888 R
ypt2889 A
ypt2891_L3_I041 G
ypt2892 G
ypt2893_L3_I025 R
ypt2894 G
ypt2895_L3_I026 R
ypt2902 G
ypt2909 G
ypt2910 G
ypt2911 A
ypt2912 R
ypt2918 G
ypt2929 R
ypt2930 A
ypt3001 A
ypt3002 R
ypt3003 R
ypt3004 G
ypt3005 G
ypt3006 G
ypt3007 G
ypt3008 R
ypt3009 R
ypt3010 G
ypt3011 R
ypt3012 R
ypt3016 A
ypt3017 R
ypt3028 R
ypt3038 G
ypt3040 A
ypt3041 G
ypt3042 A
ypt3043 A
ypt3044 R
ypt3045 R
ypt3046 A
ypt3047 A
ypt3050 A
ypt3051 R
ypt3052 R
ypt3061 A
ypt3069 A
ypt3072 G
ypt3133 G
ypt3134 A
ypt3135 G
ypt3136 G
ypt3137 R
ypt3138 A
ypt3139 G
ypt3140 G
ypt3141 G
ypt3142 A
ypt3143 G
ypt3144_L3_I039 G
ypt3145 G
ypt3146 R
ypt3149_L2_I034 A
ypt3150_L8_I023 G
ypt3159_L6_I035 A
ypt3160_L8_I024 A
ypt3162_L6_I036 R
ypt3179_L8_I025 R
ypt3180 A
ypt3181_L7_I038 R
ypt3182_L1_I039 A
ypt3189_L1_I040 G
ypt3190_L8_I026 G
ypt3191_L2_I041 G
ypt3193_L1_I027 G
ypt3195_L1_I042 R
ypt3196_L2_I043 G
ypt3197_L1_I044 A
ypt3204_L7_I046 G
ypt3205_L2_I047 G
ypt3206_L1_I048 R
ypt3207_L6_I050 G
ypt3210_L6_I051 A
ypt3211_L6_I052 G
ypt3212_L4_I028 G
ypt3213_L8_I029 G
ypt3219_L1_I030 A
ypt3220_L1_I031 G
ypt3221_L1_I032 A
ypt3222_L1_I033 A
ypt3224_L8_I043 A
ypt3226_L3_I044 A
ypt3228-7_L1_I034 G
ypt3229_L8_I045 G
ypt3239_L1_I035 R
ypt3243_L8_I047 A
ypt3246_L6_I050 A
ypt3247_L6_I051 G
ypt3258_L3_I001 G
ypt3259_L6_I002 G
ypt3260_L6_I003 G
ypt3261_L7_I004 A
ypt3262_L7_I005 G
ypt3269_L7_I006 R
ypt3270_L1_I007 A
ypt3271_L7_I008 A
ypt3272_L7_I010 R
ypt3274A_L7_I011 A
ypt3277_L6_I027 A
ypt47_L2_I029 A
ypt53_L2_I032 A
ypt55_L1_I033 A
ypt890 R
ypt891 A
ypt896_L2_I047 A
ypt898 A
ypt899_L6_I051 A
ypt902_L1_I053 G
ypt903_L2_I054 A
ypt904_L4_I055 A
ypt905_L6_I056 A
ypt906_L3_I001 R
ypt907_L6_I002 A
ypt908_L1_I003 R
ypt909_L5_I004 R
ypt910_L3_I005 G
ypt913 A
ypt915 A
ypt917 A
ypt918_L3_I007 G
ypt919_L4_I008 A
ypt920_L5_I010 A
ypt921_L8_I011 G
ypt922_L4_I012 G
ypt923_L2_I051 R
ypt925_L2_I022 A
ypt926_L2_I023 A
ypt928 G
ypt929 A
ypt930 G
ypt931 G
ypt937 G
ypt939_L5_I025 G
ypt941_L5_I027 R
ypt942_L7_I028 A
ypt943 R
ypt944_L3_I030 A
ypt945_L4_I031 R
ypt946_L4_I032 A
ypt947_L5_I033 G
ypt948_L2_I034 A
ypt949_L3_I035 R
ypt950_L5_I036 A
ypt951 G
ypt952 A
ypt953 R
ypt954 R
ypt955 G
ypt956x A
ypt957 G
ypt958 R
ypt959 R
ypt960 A
ypt961 A
ypt962 A
ypt963 R
ypt965 A
ypt966 A
ypt972x R
ypt973_L4_I037 R
ypt974 G
ypt975_L8_I039 A
ypt976_L7_I040 R
ypt977_L2_I041 R
ypt978_L2_I052 A
ypt979_L6_I042 R
ypt980_L3_I043 R
ypt981_L2_I044 A
ypt982_L4_I045 R
ypt984 A
yptwj A
147209 A
147830 A
GLF_denovo A
Gallus_Sonneriatii_d A
Ypt4000 A
Ypt4879 A
Ypt4880 A