ChickenSD

ChickenSD / Individual SNP / ggaS0001001418548

Detail information of ggaS0001001418548

1.General Information

SNP ID: ggaS0001001418548
Organism: Gallus gallus
Individual: 100S

2.Allele information

Platform: SOLEXA
Method: sequence
SNP Class: SNP
Genotype: A

3.Reference Map information

Chrom Position Reference 100S
chr16 2798 G A

4.Gene information

Var ID Gene ID Transcript ID Gene Symbol Variant Effect Biotype cDNA Position Allele Change Protein ID Protein Position Residue Change
ggaS0001001418548 ENSGALG00000027865 CD1.2 upstream_gene_variant => =>
ggaS0001001418548 ENSGALG00000012494 CD1A1 intron_variant => =>
ggaS0001001418548 ENSGALG00000012494 CD1A1 intron_variant => =>

5.Individual Genotype

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Individual Genotype
101S_L1_I028 A
102S_L3_I037 A
103S A
104S_L7_I029 G
105S_L3_I039 G
106S_L6_I030 R
107S_L2_I031 G
108S_L6_I032 G
109S_L5_I033 G
10S_L1_I052 G
110S_L4_I034 G
111S_L3_I047 R
112S_L3_I035 R
113S_L1_I036 R
114S_L3_I037 R
116S_L6_I038 G
117S_L2_I039 G
118S_L4_I040 G
119S_L3_I041 A
11S G
120S_L1_I041 R
121S_L3_I042 G
123S_L4_I044 G
124S_L2_I048 G
125S_L3_I050 A
126S_L3_I051 G
127S_L2_I045 R
128S_L1_I042 A
129S_L3_I043 A
12S_L4_I011 G
130S_L4_I044 R
131S_L2_I045 R
132S_L2_I046 R
133S_L8_I046 A
134S_L2_I047 A
135S_L3_I048 A
13S_L7_I012 A
14S_L2_I021 R
15S_L6_I022 A
16S_L5_I023 G
17S_L3_I024 G
18833 A
18S_L7_I025 A
19297 R
19912 G
19S_L4_I026 R
1S R
20736 A
20S_L7_I027 G
21S_L6_I028 R
22S_L6_I029 G
23S_L2_I030 A
25S_L3_I032 G
26S A
27S_L4_I034 G
28S_L4_I035 R
29S_L3_I036 A
2S G
30S_L2_I037 R
31S_L3_I038 G
32S_L1_I039 R
33S A
35S_L5_I041 G
36S_L5_I042 R
37S_L2_I043 G
39S_L6_I053 G
3S_L4_I003 G
40S_L2_I054 G
41S_L5_I045 G
42S_L3_I055 G
43S A
44S_L4_I001 R
45S_L2_I002 G
46S_L4_I003 R
47S_L3_I046 G
48S_L1_I004 G
49S_L1_I005 R
4S_L4_I004 G
50S_L1_I047 G
51S_L6_I048 G
52S_L2_I050 G
53S_L2_I006 R
54S_L2_I007 R
55S_L1_I008 R
57S_L3_I046 R
58S_L4_I051 A
59S_L5_I052 A
5S R
61S_L8_I054 G
62S_L8_I055 R
63S_L5_I056 R
64S_L4_I001 A
65S_L5_I002 R
66S_L2_I003 G
67S_L1_I011 R
68S_L3_I012 G
69S R
70S A
71S_L3_I023 G
72S_L1_I024 G
73S_L1_I025 G
74S_L4_I026 G
75S_L3_I027 G
76S_L1_I028 R
77S_L4_I029 R
78S_L4_I030 R
79S_L2_I031 A
7S_L4_I007 A
80S_L3_I004 G
82S G
83S_L3_I033 R
84S_L5_I006 G
85S_L5_I007 G
86S_L5_I008 G
87S_L5_I010 G
88S_L4_I011 A
89S_L6_I012 A
90S_L4_I021 G
92S_L5_I023 G
93S_L7_I024 G
95S_L8_I025 G
96S_L4_I026 A
97S_L8_I027 A
98S_L3_I034 A
99S_L2_I035 A
9S G
A1 A
A10 A
A12 A
A14 A
A3 A
A8 R
BKL2 G
BLB1_L2_I007 G
BLO1 R
BLO11 G
BLO15 G
BLO2 A
BLO3_L4_I022 G
BOJA2 G
BYW3_L3_I033 A
GVF G
India1 G
India11 R
India13 G
India15 R
India17 G
India19 G
India21 R
India23 A
India25 G
India27 G
India29 R
India31 R
India33 R
India35 R
India37 G
India39 G
India41 R
India43 R
India45 R
India47 G
India5 R
India51 G
India55 R
India57 R
India59 R
India61 R
India7 A
India9 G
L2 A
N1 G
N11 A
N13 A
N18 R
N3 R
N7 A
N8 A
S-f1_L4_I106 A
S-f2_I107 R
S-f3_I108 A
S-f4_L4_I109 A
S-m1_I101 A
S-m2_I102 R
S-m3_I103 A
S-m4_L2_I104 A
S-m5_I105 G
S6 A
SAMN02486156 A
SAMN02486157 G
SAMN02486158 G
SAMN02486159 G
SAMN02486160 R
SAMN02486161 G
SAMN02486162 G
SAMN02486163 R
SAMN02486164 R
SAMN02486165 A
SAMN02486166 R
SAMN02486167 A
Silkia A
T2 R
T3 R
T5 G
TD1 R
TD12 A
TD15 G
TD22 G
TD27 G
TD30 R
TD6 G
TD9 G
Tibet A
Xcelris_101 G
Xcelris_104 G
Xcelris_105 R
Xcelris_10A G
Xcelris_10B A
Xcelris_112 R
Xcelris_114 G
Xcelris_11B A
Xcelris_12 G
Xcelris_120 R
Xcelris_127 G
Xcelris_128 A
Xcelris_129 G
Xcelris_12A G
Xcelris_13 G
Xcelris_137 A
Xcelris_143 A
Xcelris_14A A
Xcelris_14B R
Xcelris_174 G
Xcelris_1A G
Xcelris_1B A
Xcelris_219 G
Xcelris_221 A
Xcelris_222 A
Xcelris_224 A
Xcelris_226 G
Xcelris_227 A
Xcelris_282 G
Xcelris_2B A
Xcelris_3 G
Xcelris_331 G
Xcelris_333 R
Xcelris_335 A
Xcelris_336 A
Xcelris_340 A
Xcelris_341 A
Xcelris_377 A
Xcelris_378 R
Xcelris_379 A
Xcelris_380 A
Xcelris_381 A
Xcelris_382 R
Xcelris_383 R
Xcelris_384 R
Xcelris_385 R
Xcelris_392 R
Xcelris_44 G
Xcelris_4A G
Xcelris_4B G
Xcelris_5A R
Xcelris_5B A
Xcelris_67 A
Xcelris_6A A
Xcelris_6B R
Xcelris_7 G
Xcelris_77 R
Xcelris_84 A
Xcelris_8A A
Xcelris_90 A
Xcelris_98 R
Xcelris_MT-134 A
Xcelris_MT-85 A
Xcelris_MT-99 R
Y1-f1_L5_I119 R
Y1-f2_L6_I121 A
Y1-f3_L7_I101 R
Y1-m1_L6_I120 A
Y1-m2_L4_I122 A
Y1-m3_L7_I123 A
Y1-m4_I124 R
Y1-m5_L7_I102 A
YPt565 R
YPt601 A
YPt604 G
YPt609 A
YPt610 R
YPt637 R
YPt641 A
YPt648 A
You1 G
You3_L7_I1000005 R
Ypt566 R
Ypt567 R
Ypt568 A
Ypt569 A
Ypt570 A
Ypt571 A
Ypt572 A
Ypt573 A
Ypt574 A
Ypt575 R
Ypt576 R
Ypt577 G
Ypt578 A
Ypt579 R
Ypt580 A
Ypt581 A
Ypt582 R
Ypt583 R
Ypt584 A
Ypt585 R
Ypt586 A
Ypt587 A
Ypt588 A
Ypt589 A
Ypt590 A
Ypt591 A
Ypt592 A
Ypt593 A
Ypt594 A
Ypt595 A
Ypt596 A
Ypt597 A
Ypt598 A
Ypt599 A
Ypt600 A
Ypt602 A
Ypt603 G
Ypt606 G
Ypt607 G
Ypt608 A
Ypt622 A
Ypt623 R
Ypt624 R
Ypt626 R
Ypt638 A
Ypt640 R
Ypt642 A
Ypt643 R
Ypt645 A
Ypt646 R
Ypt647 A
Yt516 R
Yt517 G
Yt518 G
Yt519 R
Yt520 R
Yt521 G
Yt522 G
Yt523 R
Yt524 A
Yt525 R
Yt526 R
Yt527 G
Yt528 R
Yt529 G
Yt530 A
Yt531 G
Yt536 R
Yt538 A
Yt539 R
Yt540 R
ZJ1 A
ZJ2 A
ZJ3 G
ZJ4 G
india3 G
india49 R
production A
yp914ypt G
ypt169_L3_I011 G
ypt170_L2_I012 R
ypt171_L2_I021 A
ypt173_L2_I022 A
ypt175_L2_I023 G
ypt2041_L6_I002 A
ypt2043_L1_I037 R
ypt2051_L3_I003 G
ypt2063_L6_I005 R
ypt2069_L6_I006 G
ypt2071_L1_I038 A
ypt2082 A
ypt2086 R
ypt2091 R
ypt2092 A
ypt2093 A
ypt2094 A
ypt2095 A
ypt2098 G
ypt2100 G
ypt2101 R
ypt2102 R
ypt2103 G
ypt2105 A
ypt2106 R
ypt2107 G
ypt2108 G
ypt2109 G
ypt2110 R
ypt2111 R
ypt2112 A
ypt2114 R
ypt2115 A
ypt2116 R
ypt2117 G
ypt2118 G
ypt2119 R
ypt2120 G
ypt2121 R
ypt2122 G
ypt2124_L4_I052 R
ypt2127_L1_I036 R
ypt2128_L6_I054 A
ypt2144_L6_I055 R
ypt2145_L6_I056 R
ypt2163 R
ypt2164 A
ypt2165 R
ypt2166 G
ypt2167 G
ypt2168 R
ypt2169 R
ypt2170 R
ypt2171 G
ypt2172 R
ypt2173 R
ypt2174 A
ypt2175 A
ypt2176 G
ypt2177 G
ypt2178 R
ypt217_L2_I024 R
ypt2184 R
ypt2185 A
ypt2186 A
ypt2187 R
ypt2189 A
ypt2190 A
ypt2191 R
ypt219_L3_I025 R
ypt2200 R
ypt2201 R
ypt2205 R
ypt2209 R
ypt220_L2_I026 A
ypt2214 R
ypt2215 A
ypt2216 G
ypt2217 R
ypt2218 G
ypt2219 A
ypt221_L3_I042 G
ypt2220 A
ypt2221 A
ypt2222 A
ypt222_L3_I027 G
ypt2437 G
ypt2438 R
ypt2439 G
ypt2440 G
ypt2441 G
ypt2442 G
ypt2443 G
ypt2444 R
ypt2445 R
ypt2446 R
ypt2447 R
ypt2448 G
ypt2449 G
ypt2454 G
ypt2459 A
ypt2468 G
ypt2496 R
ypt2497 G
ypt2499 G
ypt2500 G
ypt2503 A
ypt2504 G
ypt2507 R
ypt2512 A
ypt2516 A
ypt2521 G
ypt2523 R
ypt2534 R
ypt2541 R
ypt2543 A
ypt2544 A
ypt2545 A
ypt2546 A
ypt2547 R
ypt2552 A
ypt2562 G
ypt2563 G
ypt2569 A
ypt2570 A
ypt2571 R
ypt2572 G
ypt2573 R
ypt2574 R
ypt2575 A
ypt2579 G
ypt258_L3_I028 R
ypt2598 G
ypt259_L2_I029 A
ypt2606 G
ypt2608 A
ypt2615 G
ypt2622 R
ypt2623 A
ypt2624 G
ypt2625 R
ypt2627 G
ypt2628 R
ypt2629 A
ypt262_L3_I030 G
ypt2630 R
ypt2636 G
ypt263_L3_I031 G
ypt2640 G
ypt2641 G
ypt2643 G
ypt2644 G
ypt2646 A
ypt264_L3_I032 R
ypt2650 G
ypt2653 R
ypt2656 G
ypt2657 G
ypt2658 R
ypt2661 G
ypt2664 G
ypt2665 G
ypt2669 G
ypt2670 R
ypt2671 R
ypt2672 R
ypt2678 R
ypt2706 A
ypt2722 A
ypt2724 R
ypt2733 G
ypt2739 R
ypt2740 R
ypt2745 A
ypt2746 R
ypt2760 G
ypt2761 R
ypt2765 G
ypt2766 R
ypt2780 A
ypt2781 G
ypt2782 G
ypt2783 G
ypt2784 G
ypt2785 G
ypt2786 R
ypt2787 R
ypt2788 R
ypt2789 A
ypt2790 A
ypt2791 G
ypt2799 G
ypt2800 R
ypt2808 G
ypt2810 G
ypt2812 G
ypt2813 G
ypt2814 A
ypt2815 A
ypt2816 G
ypt2819 G
ypt2821 G
ypt2822 G
ypt2823 A
ypt2824 A
ypt2825 A
ypt2826 A
ypt2827 G
ypt2828 A
ypt2831 A
ypt2832 A
ypt2842 A
ypt2843 A
ypt2849 R
ypt2859 G
ypt2860 G
ypt2862 R
ypt2863 G
ypt2870 G
ypt2871 A
ypt2887 G
ypt2888 G
ypt2889 A
ypt2891_L3_I041 G
ypt2892 G
ypt2893_L3_I025 R
ypt2894 G
ypt2895_L3_I026 R
ypt2902 G
ypt2909 G
ypt2910 R
ypt2911 A
ypt2912 G
ypt2918 G
ypt2929 R
ypt2930 R
ypt3001 R
ypt3002 R
ypt3003 G
ypt3004 G
ypt3005 R
ypt3006 R
ypt3007 R
ypt3008 G
ypt3009 R
ypt3010 G
ypt3011 R
ypt3012 R
ypt3016 R
ypt3017 R
ypt3028 A
ypt3038 G
ypt3040 A
ypt3041 G
ypt3042 A
ypt3043 A
ypt3044 R
ypt3045 R
ypt3047 A
ypt3050 A
ypt3051 A
ypt3052 R
ypt3061 A
ypt3069 A
ypt3072 A
ypt3133 R
ypt3134 A
ypt3135 A
ypt3136 G
ypt3137 A
ypt3138 A
ypt3139 G
ypt3140 G
ypt3141 G
ypt3142 R
ypt3143 G
ypt3144_L3_I039 G
ypt3145 R
ypt3146 R
ypt3149_L2_I034 A
ypt3150_L8_I023 R
ypt3159_L6_I035 A
ypt3160_L8_I024 A
ypt3162_L6_I036 R
ypt3179_L8_I025 R
ypt3180 G
ypt3181_L7_I038 R
ypt3182_L1_I039 A
ypt3189_L1_I040 G
ypt3190_L8_I026 G
ypt3191_L2_I041 G
ypt3193_L1_I027 R
ypt3195_L1_I042 G
ypt3196_L2_I043 G
ypt3197_L1_I044 A
ypt3204_L7_I046 G
ypt3205_L2_I047 G
ypt3206_L1_I048 R
ypt3207_L6_I050 G
ypt3210_L6_I051 A
ypt3211_L6_I052 R
ypt3213_L8_I029 G
ypt3219_L1_I030 A
ypt3220_L1_I031 G
ypt3221_L1_I032 R
ypt3222_L1_I033 G
ypt3224_L8_I043 A
ypt3225_L2_I053 G
ypt3226_L3_I044 G
ypt3228-7_L1_I034 G
ypt3229_L8_I045 A
ypt3243_L8_I047 A
ypt3246_L6_I050 A
ypt3247_L6_I051 R
ypt3257_L1_I056 G
ypt3260_L6_I003 G
ypt3261_L7_I004 A
ypt3262_L7_I005 G
ypt3269_L7_I006 A
ypt3270_L1_I007 A
ypt3271_L7_I008 A
ypt3272_L7_I010 G
ypt3274A_L7_I011 A
ypt4001 G
ypt50_L2_I030 A
ypt51_L2_I031 G
ypt53_L2_I032 G
ypt890 R
ypt891 A
ypt896_L2_I047 A
ypt898 A
ypt899_L6_I051 A
ypt901_L1_I052 A
ypt902_L1_I053 R
ypt903_L2_I054 A
ypt904_L4_I055 A
ypt905_L6_I056 A
ypt906_L3_I001 R
ypt907_L6_I002 R
ypt908_L1_I003 R
ypt909_L5_I004 R
ypt910_L3_I005 R
ypt912 G
ypt913 G
ypt915 G
ypt917 R
ypt918_L3_I007 A
ypt919_L4_I008 A
ypt920_L5_I010 A
ypt921_L8_I011 R
ypt922_L4_I012 G
ypt923_L2_I051 R
ypt925_L2_I022 A
ypt926_L2_I023 A
ypt929 A
ypt931 R
ypt932 A
ypt938x A
ypt940_L4_I026 R
ypt941_L5_I027 R
ypt942_L7_I028 A
ypt943 R
ypt944_L3_I030 A
ypt945_L4_I031 A
ypt946_L4_I032 A
ypt947_L5_I033 R
ypt948_L2_I034 A
ypt949_L3_I035 R
ypt950_L5_I036 A
ypt951 G
ypt952 A
ypt953 R
ypt954 R
ypt955 A
ypt956x A
ypt957 G
ypt958 R
ypt959 R
ypt960 R
ypt961 A
ypt962 A
ypt963 A
ypt964 A
ypt965 A
ypt966 A
ypt971 A
ypt972x R
ypt973_L4_I037 R
ypt974 G
ypt975_L8_I039 A
ypt976_L7_I040 R
ypt977_L2_I041 A
ypt978_L2_I052 A
ypt979_L6_I042 R
ypt980_L3_I043 R
ypt981_L2_I044 A
ypt982_L4_I045 R
ypt984 A
yptwj A
147209 A
147830 A
GLF_denovo A
Gallus_Sonneriatii_d A
Ypt4000 A
Ypt4879 A
Ypt4880 A