Accession SAMC069965
Sample name Ss.lib2
Title Hi-C of sugarcane: leaves
Sample type Plant sample
Organisms Saccharum spontaneum
Description Sugarcane AP85-441, which is a haploid (1n=4x=32) of Saccharum spontaneum, contains 32 chromosomes and 8 sets of homologous chromosomes with four members each. Our previous study reported AP85-441 contig level assembly with assembly size 3.13 Gb and N50 of 45 kb by incorporating 35,156 BAC libraries and ~80 X Pacbio reads.
Attributes
Cultivar Wile species
Biomaterial provider Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University, Fuzhou 350002, Fujian Province, China
Tissue leaf
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Release Date 2019-05-31
Accession PRJCA001420
Submitter Jing  Lin  (lolyemily@163.com)
Organization Fujian Agriculture and Forestry University cs, Chinese Academy of Sciences
Submission Date 2019-05-14

Sample Data

Resource Name Description
GSA (1) -
CRA001597 ALLHiC: assembly of allele-aware, chromosomal scale autopolyploid genomes based on Hi-C data
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Related Samples
Samples (5)