Accession SAMC065128
Sample name Genome of Bradyrhizobium japonicum HLNEAU001
Title Genomic Capacity of a Novel High-Latitude Bradyrhizobium japonicum HLNEAU001
Sample type Microbe
Organism Bradyrhizobium
Description To further understand the nodulation capacity of B. japonicum HLNEAU001, the whole genome of B. japonicum HLNEAU001 was sequenced. The draft genome of B. japonicum HLNEAU001 was generated at Novogene using an Illumina platform (Illumina TM2000), with a total of 4024 Mbp sequenced. The observed Q20 and Q30 scores were in line with the experimental requirements, and the average quality of the data after filtering and the predicted and theoretical values met the experimental reads data requirements. The genome assembly resulted in 36 contigs, from which 17 scaffolds could be assembled, with a total length of between 10,276,070 and 10,283,469 bp, in another statistical result found 19 gaps (7, 140 bp in total) distributed in the scaffold using SOAPdonovo.
Attributes
Strain Bradyrhizobium japonicum
Isolation source soil
Collection date 2017-08-10
Geographic location China Harbin
Altitude
Biomaterial provider Yan Shi
Collected by Yan Shi
Culture collection Northeast Agricultural University Copyright
Depth
Environment biome
Genotype
Host Glycine max
Host tissue sampled
Identified by
Lab host
Latitude and longitude
Mating type
Passage history
Sample size
Serotype
Serovar
Specimen voucher
Temperature
Release date 2020-03-24
BioProject Accession PRJCA001341
Submitter Dawei  Xin  (dwxin@neau.edu.cn)
Organization Northeast Agricultural University
Submission date 2019-03-24

Sample Data

Resource name Description
GSA (1) -
CRA001507 Genome of Bradyrhizobium japonicum HLNEAU001
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