| Accession | PRJCA006880 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Title | Plastomic variations of wild and cultivated rice based on 1464 complete plastomes | ||||||||||||
| Relevance | Agricultural | ||||||||||||
| Data types | Variation | ||||||||||||
| Organisms |
Oryza sativa
Oryza glumipatula Oryza longistaminata Oryza barthii Oryza glaberrima Oryza meridionalis Oryza punctata Oryza rufipogon |
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| Description | The plastid is an essential organelle in autotrophic plant cells, descending from free-living cyanobacteria acquired through endosymbiosis roughly one billion years ago. It contained a streamlined genome (plastome) that is uniparentally inherited and nonrecombinant, which make it an ideal tool for resolving the origin and diversity of plant species and populations. In the present study, a large dataset was amassed by de novo assembling plastomes from 295 common wild rice (Oryza rufipogon Griff.) and 1135 Asian cultivated rice (Oryza sativa L.) accessions, supplemented with 34 plastomes from other Oryza species. The single nucleotide variations (SNVs) detected in plastomes of all accessions were presented here. And the corresponding reference genome used in SNV calling is the plastome of Nipporbare (NC_001320.1). | ||||||||||||
| Sample scope | Multispecies | ||||||||||||
| Release date | 2021-10-15 | ||||||||||||
| Grants |
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| Submitter | Wenchuang He (hewenchuang@caas.cn) | ||||||||||||
| Organization | Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences | ||||||||||||
| Submission date | 2021-10-15 |
| Resource name | Description |
|---|---|
| BioSample (1464) show | - |