1. Home
  2. Browse
  3. PRJCA004361
Accession PRJCA004361
Title A pepper variome map by resequencing of a representative collection of pepper accessions
Relevance Agricultural
Data types Variation
Raw sequence reads
Genome sequencing
Organisms Capsicum galapagoense
Capsicum rhomboideum
Capsicum frutescens
Capsicum cardenasii
Capsicum eximium
Capsicum annuum var. glabriusculum
Capsicum minutiflorum
Capsicum pubescens
Capsicum chacoense
Capsicum baccatum var. baccatum
Capsicum baccatum
Capsicum chinense
Capsicum annuum
Capsicum flexuosum
Capsicum annuum var. annuum
Description We resequenced 347 pepper accessions covering 12 species of genus Capsicum from 31 countries, and investigated the genomic selection and genetic variations associated to traits during its domestication and breeding improvement. The 12 Capsicum species include five cultivated species and ten wild species. 311 out of the 347 accessions are belong to C. annuum, including 309 advanced inbred lines and two wild samples. These accessions were resequenced into an average depth of ~9x coverage of the reference genome (C. annuum Zunla-1).
Sample scope Multispecies
Release date 2021-01-27
Publication
PubMed ID Article title Journal name DOI Year
36176193 Pepper variome reveals the history and key loci associated with fruit domestication and diversification Molecular Plant 10.1016/j.molp.2022.09.021 2022
Grants
Agency program Grant ID Grant title
National Key Technology Research and Development Program of China 2016YFD0100200
Submitter Kang    Zhang  (zhangkang01@caas.cn)
Organization Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
Submission date 2021-01-26

Project Data

Resource name Description
BioSample (347)  show -
GSA (1) -
CRA003831 A pepper variome map by resequencing of a representative collection of pepper accessions