Accession PRJCA004179
Title MicroRNA expression profiling involved in doxorubicin-induced cardiotoxicity using high-throughput deep-sequencing analysis
Relevance Medical
Data types Transcriptome or Gene expression
Organisms Rattus norvegicus
Description MicroRNAs (miRNAs) are sensitive biomarkers and endogenous repressors of gene expression by decreasing mRNA stability and interfering with mRNA translation. Despite a number of investigations revealing the dysregulation of miRNA expression associated with cardiotoxicity induced by doxorubicin (Dox), perturbation of miRNAs directly resulting from Dox at early stage in cardiomyocytes and the target gene interaction remain largely unknown. The high-throughput deep-sequencing was used to analyze changes in global microRNA expression in cardiomyocytes, H9c2 cells, exposed to 5 μg/ml Dox for 0, 12 or 24 h, respectively. Compared with the 0-h time point, expression levels of 386 unique miRNAs were altered. Based on expression level and fold-change in miRNAs, target genes of 76 selected miRNAs were further analyzed with gene interaction networks and pathway enrichment. These miRNAs are involved in the regulation of different pathways, whose functions include cell apoptosis, proliferation, extracellular matrix (ECM) remodeling, oxidative stress and lipid metabolism. These differentially expressed miRNAs included let-7 family, miR-29b-3p, miR-378-3/5p, miR-351-3p, miR-664-3p, miR-455-3p, miR-298-3p, miR-702-5p, miR-128-1-5p, miR-671 and miR-421-5p. The present data showed that global wide miRNA profiling in Dox-induced cardiomyocytes could provide a novel mechanistic insight into understanding Dox-induced heart failure and cardiotoxicity, as well as new biomarkers and therapeutic targets.
Sample scope Synthetic
Release date 2021-01-15
Grants
Agency program Grant ID Grant title
Shanghai Municipal Commission of Health and Family planning 201540302
The Science and Technology Commission of Shanghai Changning CNKW2016Y03
Shanghai Jiao Tong University Medicine-Engineering Joint Fund YG2015MS64
Submitter Weihua    Jiang  (whjiang_tongren@126.com)
Organization Tongren Hospital, Shanghai Jiaotong University School of Medicine
Submission date 2021-01-03

Project Data

Resource name Description
BioSample (9)  show -
GSA (1) -
CRA003714 MicroRNA expression profiling involved in doxorubicin-induced cardiotoxicity using high-throughput deep-sequencing analysis