| Accession |
PRJCA002755 |
| Title |
Root microbiome in correlates with rice ecotypes and environment |
| Relevance |
Agricultural |
| Data types |
Metagenome
|
| Organisms |
Oryza sativa
|
| Description |
Rice from paddy field to rainfed dryland significantly altered the overall bacterial and fungal compositions of all ecotypes and environment conditions, with the alpha diversity of upland and irrigated ecotype root microbiomes showing the greatest decreased from paddy field to rainfed dryland. As for beta diversity, we found differences in the root microbiome assembly between rainfed dryland and paddy field. In addition, the effect of two ecotypes rice on bacterial diversity was higher than fungal community. The overall response of the root microbiome to upland ecotype rice and rainfed dryland were taxonomically driven by an enrichment of multiple Enterbacteriaceae, Enterobacterales, Gammaproteobacteria, Proteobacteria and Serratia, as well as a depletion of several Dothideomycetes, Capnodiales and Asceomycota. Interestingly, when the ecotypes rice leave the original environment, they will specifically enrich the root microbes, such as the enrichment of Thermoleophilia, Actinobacteria, Dothideomycetes and Burkholderiaceae when the irrigated ecotype rice move from paddy field to rainfed dryland. |
| Sample scope |
Environment |
| Release date |
2020-05-28 |
| Publication |
| PubMed ID |
Article title |
Journal name |
DOI |
Year |
| 32892063
|
Environmental adaptation of the root microbiome in two rice ecotypes
|
Microbiological Research
|
10.1016/j.micres.2020.126588
|
2020
|
|
|
| Biomaterial provider |
Peng Xu, CAS Key Laboratory of Tropical Plant Resources and Sustainable Use, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming 650223, China |
| Grants |
| Agency |
program |
Grant ID |
Grant title |
| Chinese Academy of Sciences (CAS)
|
|
2017XTBGTOP2
|
|
|
|
| Submitter |
Zhiqiang
Pang (pangzhiqiang@xtbg.ac.cn)
|
| Organization |
Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences |
| Submission date |
2020-05-28 |
