Accession PRJCA002292
Title Gene and genome evolution across the phylogeny of Bombus
Relevance Evolution
Data types Whole genome sequencing
Transcriptome or Gene expression
Genome sequencing and assembly
Raw sequence reads
Assembly
Organisms Bombus haemorrhoidalis
Bombus skorikovi
Bombus confusus
Bombus turneri
Bombus ignitus
Bombus soroeensis
Bombus polaris
Bombus waltoni
Bombus difficillimus
Bombus cullumanus
Bombus picipes
Bombus opulentus
Bombus consobrinus
Bombus sibiricus
Bombus breviceps
Bombus pyrosoma
Bombus superbus
Description We performed de novo sequencing and assembly of the genomes and transcriptomes of 17 bumblebee species, representing all of the 15 subgenera within the genus Bombus. Then, we did comparative analysis on genome structure, genome content, and gene evolutionary dynamics across the phylogeny of Bombus to infer how bumblebee genes and genomes evolve and how they vary in species traits.
Sample scope Multispecies
Release date 2020-09-21
Grants
Agency program Grant ID Grant title
National Natural Science Foundation of China (NSFC) General Program 31971397
the Fundamental Research Funds for Central Non-profit Scientific Institution Y2019XK13
Submitter Cheng    Sun  (suncheng@caas.cn)
Organization Chinese Academy of Agricultural Sciences
Submission date 2019-06-21

Project Data

Resource name Description
BioSample (36)  show -
GSA (3) -
CRA002416 Whole genome shotgun data for 17 bumblebee species
CRA002439 The RNA-seq data for 14 bumblebees
CRA002452 HiC sequencing data for 5 bumblebees