Accession

PRJCA001763

Title

Haplotype-resolved genome analyses of a heterozygous diploid potato

Relevance

Agricultural

Data types

Whole genome sequencing
Genome sequencing and assembly
Raw sequence reads
Genome sequencing
Assembly

Organisms

Solanum tuberosum

Description

Haplotype-resolved genome analyses of a heterozygous diploid potato

Sample scope

Monoisolate

Release date

2019-09-24

Grants

Agency	program	Grant ID	Grant title
National Natural Science Foundation of China (NSFC)		31601360

Submitter

Die Tang (tangdie_solab@163.com)

Organization

Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences

Submission date

2019-08-26

Project Data

Resource name	Description
BioSample (43) show	-
SAMC109787	Bisulfite-Seq of potato tissue: mature leaf, the third replicate.
SAMC109786	Bisulfite-Seq of potato tissue: mature leaf, the second replicate.
SAMC109785	Bisulfite-Seq of potato tissue: mature leaf, the first replicate.
SAMC109784	Bisulfite-Seq of potato tissue: immature big tuber (1 cm <transection diameter < 5 cm), the third replicate.
SAMC109783	Bisulfite-Seq of potato tissue: immature big tuber (1 cm <transection diameter < 5 cm), the second replicate.
SAMC109782	Bisulfite-Seq of potato tissue: immature big tuber (1 cm <transection diameter < 5 cm), the first replicate.
SAMC109781	Bisulfite-Seq of potato tissue: immature small tuber (transection diameter < 1 cm), the third replicate.
SAMC109780	Bisulfite-Seq of potato tissue: immature small tuber (transection diameter < 1 cm), the second replicate.
SAMC109779	Bisulfite-Seq of potato tissue: immature small tuber (transection diameter < 1 cm), the first replicate.
SAMC109778	RNA-seq of potato tissue: immature big tuber (1 cm <transection diameter < 5 cm), the third replicate.
SAMC109777	RNA-seq of potato tissue: immature big tuber (1 cm <transection diameter < 5 cm), the second replicate.
SAMC109776	RNA-seq of potato tissue: immature big tuber (1 cm <transection diameter < 5 cm), the first replicate.
SAMC109775	RNA-seq of potato tissue: immature small tuber (transection diameter < 1 cm), the third replicate.
SAMC109774	RNA-seq of potato tissue: immature small tuber (transection diameter < 1 cm), the second replicate.
SAMC109773	RNA-seq of potato tissue: immature small tuber (transection diameter < 1 cm), the first replicate.
SAMC109772	RNA-seq of potato tissue: stolon, the third replicate.
SAMC109771	RNA-seq of potato tissue: stolon, the second replicate.
SAMC109770	RNA-seq of potato tissue: stolon, the first replicate.
SAMC109769	RNA-seq of potato tissue: root, the third replicate.
SAMC109768	RNA-seq of potato tissue: root, the second replicate.
SAMC109767	RNA-seq of potato tissue: root, the first replicate.
SAMC109766	RNA-seq of potato tissue: stem, the third replicate.
SAMC109765	RNA-seq of potato tissue: stem, the second replicate.
SAMC109764	RNA-seq of potato tissue: stem, the first replicate.
SAMC109763	RNA-seq of potato tissue: carpel, the third replicate.
SAMC109762	RNA-seq of potato tissue: carpel, the second replicate.
SAMC109761	RNA-seq of potato tissue: carpel, the first replicate.
SAMC109760	RNA-seq of potato tissue: anther, the third replicate.
SAMC109759	RNA-seq of potato tissue: anther, the second replicate.
SAMC109758	RNA-seq of potato tissue: anther, the first replicate.
SAMC109757	RNA-seq of potato tissue: perianth, the third replicate.
SAMC109756	RNA-seq of potato tissue: perianth, the second replicate.
SAMC109755	RNA-seq of potato tissue: perianth, the first replicate.
SAMC109754	RNA-seq of potato tissue: mature leaf, the third replicate.
SAMC109753	RNA-seq of potato tissue: mature leaf, the second replicate.
SAMC109752	RNA-seq of potato tissue: mature leaf, the first replicate.
SAMC109751	RNA-seq of potato tissue: young leaf, the third replicate.
SAMC109750	RNA-seq of potato tissue: young leaf, the second replicate.
SAMC109749	RNA-seq of potato tissue: young leaf, the first replicate.
SAMC109748	Sequencing of HiC library of potato: RH89-039-16
SAMC109747	Nanopore sequencing of potato: RH89-039-16
SAMC109746	Sequencing of 10X Genomics library of potato: RH89-039-16
SAMC109745	Whole genome sequencing of potato: RH89-039-16
GSA (2)	-
CRA004501	Fast5 of RH ONT data
CRA002005	Haplotype-resolved genome analyses of a heterozygous diploid potato