Accession PRJCA001600
Title Accurate quantification of circular RNAs identifies extensive circular isoform switching events
Relevance Genetics
Data Types Transcriptome or Gene expression
Raw sequence reads
Organisms Homo sapiens
Description In this study, we performed RNA interference-mediated knockdown of TRA2B, PTBP1 and MBNL1 in HeLa cells, and constructed 2x101bp paired end RNA-seq libraries for mock treatment and three knockdown samples. We divided each sample into two fractions, where rRNA depletion and RNase R digestion were permed to one fraction, and the other fraction was only treated by rRNA depletion.
Sample scope Monoisolate
Release date 2019-07-25
Grants
Agency program Grant ID Grant title
National Natural Science Foundation of China (NSFC) 31722031
Submitter Jinyang    Zhang  (zhangjinyang@biols.ac.cn)
Organization Beijing Institutes of Life Sciences
Submission date 2019-07-25

Project Data

Resource name Description
BioSample (12) -
SAMC079932 TRA2B RNaseR rep2
SAMC079931 TRA2B RNaseR rep1
SAMC079930 TRA2B
SAMC079929 PTBP1 RNaseR rep2
SAMC079928 PTBP1 RNaseR rep1
SAMC079927 PTBP1
SAMC079926 MBNL1 RNaseR rep2
SAMC079925 MBNL1 RNaseR rep1
SAMC079924 MBNL1
SAMC079923 Control RNaseR rep2
SAMC079922 Control RNaseR rep1
SAMC079921 Control
GSA (1) -
CRA001838 Circular RNAs transcriptome
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