| Accession |
PRJCA001266 |
| Title |
Sequencing of the transcriptome in Gymnocypris selincuoensis |
| Relevance |
Evolution |
| Data types |
Transcriptome or Gene expression
Raw sequence reads
|
| Organisms |
Schizopygopsis selincuoensis
|
| Description |
The lakes on the Qinghai-Tibet Plateau (QTP) are the largest and highest lake group in the world. Gymnocypris selincuoensis is the only cyprinid fish living in Lake Selincuo, the largest lake on QTP. However, its genetic resource is still blank, limiting studies on molecular and genetic analysis. In this study, the transcriptome of G. selincuoensis was first generated by using PacBio Iso-Seq and Illumina RNA-seq. Alternative splicing, tissue gene expression atlas, lncRNAs and simple sequence repeats were obtained from this project, which would provide valuable genetic resources for further studies on adaptive evolution, gene expression and population genetics in G. selincuoensis and other congeneric fishes. |
| Sample scope |
Monoisolate |
| Release date |
2020-07-15 |
| Publication |
| PubMed ID |
Article title |
Journal name |
DOI |
Year |
| 31274170
|
Characterization and analysis of the transcriptome in Gymnocypris selincuoensis on the Qinghai-Tibetan Plateau using single-molecule long-read sequencing and RNA-seq
|
DNA Research
|
10.1093/dnares/dsz014
|
2019
|
|
|
| Grants |
| Agency |
program |
Grant ID |
Grant title |
| Chinese Academy of Sciences (CAS)
|
Strategic Priority Research Program of Chinese Academy of Sciences (CAS)
|
XDB310403
|
|
|
|
| Submitter |
Xiu
Feng (fengxiu@ihb.ac.cn)
|
| Organization |
Institute of Hydrobiology, Chinese Academy of Sciences |
| Submission date |
2019-01-29 |
