Accession PRJCA001197
Title De novo assembly of rhesus monkey
Relevance Evolution
Umbrella project

eGPS: evolutionary Genotype-Phenotype Systems biology

Cranial Capacity & Structure

Genetic mechanism and function of key genes in the evolution of animal brain

Data Types Whole genome sequencing
Transcriptome or Gene expression
Assembly
Organisms Macaca mulatta
Description We generated 299.6 Gbp SMRT sequencing data (100-fold genome coverage) for rhesus macaque (Macaca mulatta), 304 Gbp BioNano Saphyr sequencing data (101-fold genome coverage), 308 Gbp Hi-C sequencing data (105-fold genome coverage) and 150 Gbp Illumina short-read sequencing data (50-fold genome coverage). Using FALCON assembler and multiple scaffolding strategies, we generate a rhesus assembly (rheMacS) of 2.95 Gbp with contig N50 length of 8.19 Mbp and scaffolds N50 length of 13.64 Mbp. RheMacS improve almost 75 times for contiguity and 15 times completeness comparing to the latest version of rhesus monkey reference genome rheMac8.
Sample scope Monoisolate
Release date 2019-08-19
Grants
Agency program Grant ID Grant title
Chinese Academy of Sciences (CAS) XDB13010000
National Natural Science Foundation of China (NSFC) 31730088
Submitter Yaoxi    He  (heyaoxi@mail.kiz.ac.cn)
Organization Kunming Institute of Zoology, Chinese Academy of Sciences
Submission date 2019-01-10

Project Data

Resource name Description
BioSample (18) -
SAMC053454 rheMacS monkey
SAMC090948 rheMacS_large_intestine
SAMC090964 rheMacS_10tissues_mix
SAMC090963 rheMacS_pancreas
SAMC090962 rheMacS_heart
SAMC090961 rheMacS_small_intestine
SAMC090960 rheMacS_stomach
SAMC090959 rheMacS_kidney
SAMC090958 rheMacS_spleen
SAMC090957 rheMacS_skin
SAMC090956 rheMacS_cerebellum
SAMC090955 rheMacS_PFC
SAMC090954 rheMacS_bladder
SAMC090953 rheMacS_muscle
SAMC090952 rheMacS_testis
SAMC090951 rheMacS_liver
SAMC090950 rheMacS_epididymis
SAMC090949 rheMacS_lung
GSA (1) -
CRA001919 Long-read assembly of the Chinese rhesus macaque genome and identification of ape-specific structural variants