Accession PRJCA001069
Title gene expression in adipose tissues of pig
Data Types Transcriptome or Gene expression
Organisms Sus scrofa
Description We cultured the lean pig breed Danish-Landrace and the obese breed Min pig to characterize the developmental process of adipose tissues at the juvenile and the juvenile-to-adult stages. Using RNA-seq experiment, we isolated subcutaneous adipose tissues derived from 4-week pigs and 16-week pigs and identified 24,718 of expressed transcription unites. Of which, 6,327 genes were differentially expressed between breeds and/or between developmental stages. Compared with the obese pigs, the up-regulated genes in the lean pig breeds showed significantly function and pathway enrichment in fatty acid degradation and mitochondrial functions. Further analysis uncovered the distinct usage preferences of the three PPARγ alternative promoters associated with the developmental process of adipose tissues in the two breeds.
Sample scope Multiisolate
Release date 2018-12-05
Grants
Agency program Grant ID Grant title
National Natural Science Foundation of Heilongjiang Province of China QC2017014
Submitter Na    Chen  (chennvnv@163.com)
Organization Institute of Crop Sciences, Chinese Academy of Agricultural Sciences
Submission date 2018-10-13

Project Data

Resource name Description
BioSample (12) -
SAMC047181 DL_16W_Rep3
SAMC047180 DL_16W_Rep2
SAMC047179 DL_16W_Rep1
SAMC047178 DL_4W_Rep3
SAMC047177 DL_4W_Rep2
SAMC047176 DL_4W_Rep1
SAMC047175 Min_16W_Rep3
SAMC047174 Min_16W_Rep2
SAMC047173 Min_16W_Rep1
SAMC047172 Min_4W_Rep3
SAMC047171 Min_4W_Rep2
SAMC047170 Min_4W_Rep1
GSA (1) -
CRA001170 gene expression in adipose tissues of pigs
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