Accession PRJCA001057
Title Discovery of unique single nucleotide polymorphisms associated with high nighttime temperature stress in rice using a hybrid sequencing strategy
Data Types Raw sequence reads
Organisms Oryza sativa
Description First, comparative transcriptomics between a heat-tolerant strain and heat-sensitive strain in response to high nighttime temperature stress was carried out using a hybrid sequencing strategy (TGS and SGS) to detect the relative differentially expressed genes (RDEGs). Second, the genomic homologous DNA sequences of the RDEGs were retrieved from the reference genome. Third, genome re-sequencing for both HTS and HSS was performed, and the generated short reads were used to call unique SNP loci for the RDEGs, using the retrieved homologous DNA sequences as a reference.
Sample scope Monoisolate
Release date 2018-10-17
Publication
PubMed ID Article title Journal name DOI Year
Comparative Analysis of the Transcriptional Response of Tolerant and Sensitive Wheat Genotypes to Drought Stress in Field Conditions Agronomy 10.3390/agronomy8110247 2018
Grants
Agency program Grant ID Grant title
National Natural Science Foundation of China (NSFC) 31471467
National Natural Science Foundation of China (NSFC) 31560387
National Natural Science Foundation of China (NSFC) 31860359
Submitter Liao    Jiang-Lin  (jlliao514815@163.com)
Organization Jiangxi Agricultural University
Submission date 2018-10-07

Project Data

Resource name Description
BioSample (15) -
SAMC046979 SGS for the genome re-sequencing of the heat-sensitive strain
SAMC046978 SGS for the genome re-sequencing of the heat-tolerant strain
SAMC046977 SGS for the transcriptome of the heat-sensitive strain of the control 3
SAMC046976 SGS for the transcriptome of the heat-sensitive strain of the control 2
SAMC046975 SGS for the transcriptome of the heat-sensitive strain of the control 1
SAMC046974 SGS for the transcriptome of the heat-sensitive strain of the treatment 3
SAMC046973 SGS for the transcriptome of the heat-sensitive strain of the treatment 2
SAMC046972 SGS for the transcriptome of the heat-sensitive strain of the treatment 1
SAMC046971 SGS for the transcriptome of the heat-tolerant strain of the control 3
SAMC046970 SGS for the transcriptome of the heat-tolerant strain of the control 2
SAMC046969 SGS for the transcriptome of the heat-tolerant strain of the control 1
SAMC046968 SGS for the transcriptome of the heat-tolerant strain of the treatment 3
SAMC046967 SGS for the transcriptome of the heat-tolerant strain of the treatment 2
SAMC046966 SGS for the transcriptome of the heat-tolerant strain of the treatment 1
SAMC046965 TGS for the full-length mRNA sequences
GSA (1) -
CRA001148 Discovery of unique single nucleotide polymorphisms associated with high nighttime temperature stress in rice using a hybrid sequencing strategy
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