Accession PRJCA001042
Title Single-cell sequencing of holo-transcriptome
Data Types Exome
Transcriptome or Gene expression
Raw sequence reads
Organisms Mus musculus
Homo sapiens
Description We introduce a single-cell holo-transcriptome sequencing (Holo-Seq) has the same quantitative accuracy and uniform coverage with a complete strand of origin information as bulk RNA-seq. Most importantly, Holo-Seq can simultaneously observe small-RNAs and mRNAs in a single cell. Furthermore, we acquire small-RNA and mRNA dual transcriptomes of 32 human hepatocellular carcinoma single cells, which display the genome-wide super-enhancer activity and hepatic neoplasm kinetics of these cells.
Sample scope Single cell
Release date 2018-09-29
General information
Agency program Grant ID Grant title
Nature Science Foundation of Zhejiang Province LR15C060001
National Program on Key Research Project of China 2017YFA0104901
Submitter Zhengyun    Xiao  (xiaozhengyun1993@126.com)
Organization Zhejiang University
Submission date 2018-09-21

Project Data

Resource name Description
BioSample (152) -
SAMC046788 RNA-Seq of Mus musculus: ES Cell
SAMC046787 RNA-Seq of Mus musculus: ES Cell
SAMC046634 RNA-Seq of human sapiens: HEK293T Cell
SAMC046633 RNA-Seq of human sapiens: HEK293T Cell
SAMC046632 RNA-Seq of human sapiens: HEK293T Cell
SAMC046620 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046619 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046618 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046617 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046616 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046615 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046614 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046613 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046612 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046611 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046610 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046609 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046608 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046607 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046606 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046605 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046604 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046603 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046602 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046601 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046600 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046599 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046598 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046597 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046596 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046595 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046594 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046593 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046592 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046591 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046590 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046589 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046588 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046587 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046586 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046585 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046584 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046583 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046582 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046581 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046580 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046579 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046578 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046577 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046576 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046575 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046574 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046573 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046572 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046571 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046570 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046569 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046568 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046567 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046566 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046565 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046564 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046563 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046562 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046561 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046560 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046559 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046558 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046557 scRNA-Seq of human:hepatocellular carcinoma cell
SAMC046556 Exome-capture-Seq of human:MCF7 cell
SAMC046555 scRNA-Seq of human:MCF7 cell
SAMC046554 scRNA-Seq of human:HEK293T cell
SAMC046553 scRNA-Seq of human:HEK293T cell
SAMC046552 scRNA-Seq of human:HEK293T cell
SAMC046551 scRNA-Seq of human:HEK293T cell
SAMC046550 scRNA-Seq of human:HEK293T cell
SAMC046549 scRNA-Seq of human:HEK293T cell
SAMC046631 RNA-Seq of Mus musculus: ES Cell
SAMC046630 RNA-Seq of Mus musculus: ES Cell
SAMC046629 RNA-Seq of Mus musculus: ES Cell
SAMC046628 RNA-Seq of Mus musculus: ES Cell
SAMC046627 RNA-Seq of Mus musculus: ES Cell
SAMC046626 RNA-Seq of Mus musculus: ES Cell
SAMC046625 RNA-Seq of Mus musculus: ES Cell
SAMC046624 RNA-Seq of Mus musculus: ES Cell
SAMC046623 RNA-Seq of Mus musculus: ES Cell
SAMC046622 RNA-Seq of Mus musculus: ES Cell
SAMC046621 RNA-Seq of Mus musculus: ES Cell
SAMC046536 RNA-Seq of Mus musculus: ES Cell
SAMC046535 RNA-Seq of Mus musculus: ES Cell
SAMC046534 scRNA-Seq of Mus musculus: ES Cell
SAMC046533 scRNA-Seq of Mus musculus: ES Cell
SAMC046532 scRNA-Seq of Mus musculus: ES Cell
SAMC046531 scRNA-Seq of Mus musculus: ES Cell
SAMC046530 scRNA-Seq of Mus musculus: ES Cell
SAMC046529 scRNA-Seq of Mus musculus: ES Cell
SAMC046528 scRNA-Seq of Mus musculus: ES Cell
SAMC046527 scRNA-Seq of Mus musculus: ES Cell
SAMC046526 scRNA-Seq of Mus musculus: ES Cell
SAMC046525 scRNA-Seq of Mus musculus: ES Cell
SAMC046524 scRNA-Seq of Mus musculus: ES Cell
SAMC046523 scRNA-Seq of Mus musculus: ES Cell
SAMC046522 scRNA-Seq of Mus musculus: ES Cell
SAMC046521 scRNA-Seq of Mus musculus: ES Cell
SAMC046520 scRNA-Seq of Mus musculus: ES Cell
SAMC046519 scRNA-Seq of Mus musculus: ES Cell
SAMC046518 scRNA-Seq of Mus musculus: ES Cell
SAMC046517 scRNA-Seq of Mus musculus: ES Cell
SAMC046516 scRNA-Seq of Mus musculus: ES Cell
SAMC046515 scRNA-Seq of Mus musculus: ES Cell
SAMC046514 scRNA-Seq of Mus musculus: ES Cell
SAMC046513 scRNA-Seq of Mus musculus: ES Cell
SAMC046512 scRNA-Seq of Mus musculus: ES Cell
SAMC046511 scRNA-Seq of Mus musculus: ES Cell
SAMC046510 scRNA-Seq of Mus musculus: ES Cell
SAMC046509 scRNA-Seq of Mus musculus: ES Cell
SAMC046508 scRNA-Seq of Mus musculus: ES Cell
SAMC046507 RNA-Seq of Mus musculus: ES Cell
SAMC046506 RNA-Seq of Mus musculus: ES Cell
SAMC046505 scRNA-Seq of Mus musculus: ES Cell
SAMC046504 scRNA-Seq of Mus musculus: ES Cell
SAMC046503 scRNA-Seq of Mus musculus: ES Cell
SAMC046502 scRNA-Seq of Mus musculus: ES Cell
SAMC046501 scRNA-Seq of Mus musculus: ES Cell
SAMC046500 scRNA-Seq of Mus musculus: ES Cell
SAMC046499 scRNA-Seq of Mus musculus: ES Cell
SAMC046498 scRNA-Seq of Mus musculus: ES Cell
SAMC046497 scRNA-Seq of Mus musculus: ES Cell
SAMC046496 scRNA-Seq of Mus musculus: ES Cell
SAMC046495 RNA-Seq of Mus musculus: ES Cell
SAMC046494 RNA-Seq of Mus musculus: ES Cell
SAMC046493 scRNA-Seq of Mus musculus: ES Cell
SAMC046492 scRNA-Seq of Mus musculus: ES Cell
SAMC046491 scRNA-Seq of Mus musculus: ES Cell
SAMC046490 scRNA-Seq of Mus musculus: ES Cell
SAMC046489 scRNA-Seq of Mus musculus: ES Cell
SAMC046488 scRNA-Seq of Mus musculus: ES Cell
SAMC046487 scRNA-Seq of Mus musculus: ES Cell
SAMC046486 scRNA-Seq of Mus musculus: ES Cell
SAMC046485 scRNA-Seq of Mus musculus: ES Cell
SAMC046484 scRNA-Seq of Mus musculus: ES Cell
SAMC046483 scRNA-Seq of Mus musculus: ES Cell
SAMC046482 scRNA-Seq of Mus musculus: ES Cell
SAMC046481 scRNA-Seq of Mus musculus: ES Cell
SAMC046480 scRNA-Seq of Mus musculus: ES Cell
SAMC046479 scRNA-Seq of Mus musculus: ES Cell
SAMC046478 scRNA-Seq of Mus musculus: ES Cell
SAMC046477 scRNA-Seq of Mus musculus: ES Cell
SAMC046476 scRNA-Seq of Mus musculus: ES Cell
SAMC046475 scRNA-Seq of Mus musculus: ES Cell
SAMC046474 scRNA-Seq of Mus musculus: ES Cell
SAMC046473 scRNA-Seq of Mus musculus: ES Cell
GSA (2) -
CRA001131 Single-cell sequencing of holo-transcriptome: Mus musculus
CRA001133 Single-cell sequencing of holo-transcriptome: Homo sapiens
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