Accession PRJCA000902
Title De novo assembly of Gmax_ZH13
Umbrella project

MMDB: Molecular Module-based Designer Breeding Systems

XDA08020000: Analysis of module systems and their coupling effects

XDA08020200: Design of optimized path for assembly of multi-modules

XDA08020202: Analysis and assembly of molecular module systems for high and stable yield in soybean

Data type Genome sequencing and assembly
Raw sequence reads
Assembly
Organism Glycine max
Description Here we report the de novo genome assembly of Zhonghuang 13 (Gmax_ZH13). Comparison analyses between this genome and the newest Williams 82 reference genome, we identified 270,938 (Zhonghuang 13) and 257,572 (Willams 82) structure variations between them including translocation and/or inversion events, long presence and small insertions events. Furthermore, a comprehensive gene co-expression network were established, which help us to mine potential key genes in controlling agronomical important traits. The genome will facilitate soybean genomics research and elite cultivar improvement.
Sample scope Monoisolate
Release date 2018-07-30
Publication
PubMed ID Article title Journal name DOI Year
30062469 De novo assembly of a Chinese soybean genome Science China Life Sciences 10.1007/s11427-018-9360-0 2018
Submitter Yanting    Shen  (ytshen@genetics.ac.cn)
Organization Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Submission date 2018-06-06

Project Data

Resource name Description
BioSample (5) -
SAMC044344 Mix-RNA
SAMC044343 leaf-BioNano
SAMC044342 leaf-DNA-HiC
SAMC044341 leaf-DNA-Hiseq
SAMC044340 leaf-DNA-PacBio
GSA (1) -
CRA001007 De novo assembly of Gmax_ZH13
-