Accession PRJCA000902
Title De novo assembly of Gmax_ZH13
Relevance Agricultural
Umbrella project

MMDB: Molecular Module-based Designer Breeding Systems

XDA08020000: Analysis of module systems and their coupling effects

XDA08020200: Design of optimized path for assembly of multi-modules

XDA08020202: Analysis and assembly of molecular module systems for high and stable yield in soybean

Data Types Genome sequencing and assembly
Raw sequence reads
Assembly
Organisms Glycine max
Description Here we report the de novo genome assembly of Zhonghuang 13 (Gmax_ZH13). Comparison analyses between this genome and the newest Williams 82 reference genome, we identified 270,938 (Zhonghuang 13) and 257,572 (Willams 82) structure variations between them including translocation and/or inversion events, long presence and small insertions events. Furthermore, a comprehensive gene co-expression network were established, which help us to mine potential key genes in controlling agronomical important traits. The genome will facilitate soybean genomics research and elite cultivar improvement.
Sample scope Monoisolate
Release date 2018-07-30
Publication
PubMed ID Article title Journal name DOI Year
30062469 De novo assembly of a Chinese soybean genome Science China Life Sciences 10.1007/s11427-018-9360-0 2018
31444683 Update soybean Zhonghuang 13 genome to a golden reference Science China Life Sciences 10.1007/s11427-019-9822-2 2019
Submitter Yanting    Shen  (ytshen@genetics.ac.cn)
Organization Institute of Genetics and Developmental Biology, Chinese Academy of Sciences
Submission date 2018-06-06

Project Data

Resource name Description
BioSample (59) -
SAMC079193 seed-5_2
SAMC079192 seed-4_2
SAMC079191 seed-3_2
SAMC079190 seed-2_2
SAMC079189 seed-1_2
SAMC079188 pod-3_2
SAMC079187 pod-2_2
SAMC079186 pod-1_2
SAMC079185 pod$seed-3_2
SAMC079184 pod$seed-2_2
SAMC079183 pod$seed-1_2
SAMC079182 flo-5_2
SAMC079181 flo-4_2
SAMC079180 flo-3_2
SAMC079179 flo-2_2
SAMC079178 shoot_meristem_2
SAMC079177 flo-1_2
SAMC079176 leaf-2_2
SAMC079175 leafbud-3_2
SAMC079174 stem-2_2
SAMC079173 cotyledon-2_2
SAMC079172 leaf-1_2
SAMC079171 leafbud-2_2
SAMC079170 leafbud-1_2
SAMC079169 stem-1_2
SAMC079168 root_2
SAMC079167 cotyledon-1_2
SAMC079166 seed-5_1
SAMC079165 seed-4_1
SAMC079164 seed-3_1
SAMC079163 seed-2_1
SAMC079162 seed-1_1
SAMC079161 pod-3_1
SAMC079160 pod-2_1
SAMC079159 pod-1_1
SAMC079158 pod$seed-3_1
SAMC079157 pod$seed-2_1
SAMC079156 pod$seed-1_1
SAMC079155 flo-5_1
SAMC079154 flo-4_1
SAMC079153 flo-3_1
SAMC079152 flo-2_1
SAMC079151 shoot_meristem_1
SAMC079150 flo-1_1
SAMC079149 leaf-2_1
SAMC079148 leafbud-3_1
SAMC079147 stem-2_1
SAMC079146 cotyledon-2_1
SAMC079145 leaf-1_1
SAMC079144 leafbud-2_1
SAMC079143 leafbud-1_1
SAMC079142 stem-1_1
SAMC079141 root_1
SAMC079140 cotyledon-1_1
SAMC044344 Mix-RNA
SAMC044343 leaf-BioNano
SAMC044342 leaf-DNA-HiC
SAMC044341 leaf-DNA-Hiseq
SAMC044340 leaf-DNA-PacBio
GSA (2) -
CRA001810 de-novo assemly of Gmax_ZH13_v2.0
CRA001007 De novo assembly of Gmax_ZH13