Accession PRJCA000748
Title Pistachio genomes elucidate salt-tolerance adaptation and domestication
Data Types Whole genome sequencing
Transcriptome or Gene expression
Genome sequencing and assembly
Organisms Pistacia vera
Pistacia integerrima
Pistacia khinjuk
Pistacia atlantica subsp. mutica
Pistacia terebinthus subsp. palaestina
Description We assembled a draft pistachio reference genome, and re-sequenced 107 whole genomes from 93 domestic and 14 wild pistachio individuals, and another 35 genomes from 13 Pistacia mutica, 13 Pistacia khinjuk, 4 Pistacia integerrima, 5 Pistacia palaestina. Utilizing comparative genomic analyses, we found expanded gene families, e.g. cytochrome P450 and chitinase, which were likely involved in salt tolerance for pistachio supported by RNA-sequencing. Comparative population genomic analyses revealed pistachio was domesticated ~8000 year ago, and many genes under artificial selection, particularly genes involved in starch metabolism and seed development, which likely contributed to the successful domestication of pistachio.
Sample scope Multispecies
Release date 2019-02-06
Submitter Dong-Dong    Wu  (wudongdong@mail.kiz.ac.cn)
Organization Kunming Institute of Zoology, Chinese Academy of Sciences
Submission date 2018-02-05

Project Data

Resource name Description
BioSample (155) -
SAMC043606 genome of de novo sample
SAMC043605 transcriptome of 36
SAMC043604 transcriptome of 35
SAMC043603 transcriptome of 34
SAMC043602 transcriptome of 33
SAMC043601 transcriptome of 32
SAMC043600 transcriptome of 31
SAMC043599 transcriptome of 30
SAMC043598 transcriptome of 29
SAMC043597 transcriptome of 28
SAMC043596 transcriptome of 27
SAMC043595 transcriptome of 26
SAMC043594 transcriptome of 25
SAMC043593 genome of N135
SAMC043592 genome of N134
SAMC043591 genome of N133
SAMC043590 genome of N132
SAMC043589 genome of N131
SAMC043588 genome of N130
SAMC043587 genome of N129
SAMC043586 genome of N127
SAMC043585 genome of N126
SAMC043584 genome of N125
SAMC043583 genome of N124
SAMC043582 genome of N123
SAMC043581 genome of N66
SAMC043580 genome of N65
SAMC043579 genome of N91
SAMC043578 genome of N90
SAMC043577 genome of N89
SAMC043576 genome of N88
SAMC043575 genome of N87
SAMC043574 genome of N144
SAMC043573 genome of N143
SAMC043572 genome of N142
SAMC043571 genome of N141
SAMC043570 genome of N140
SAMC043569 genome of N139
SAMC043568 genome of N138
SAMC043567 genome of N137
SAMC043566 genome of N136
SAMC043565 genome of N51
SAMC043564 genome of N50
SAMC043563 genome of N47
SAMC043562 genome of N46
SAMC043561 genome of N154
SAMC043560 genome of N153
SAMC043559 genome of N152
SAMC043558 genome of N151
SAMC043557 genome of N150
SAMC043556 genome of N149
SAMC043555 genome of N148
SAMC043554 genome of N147
SAMC043553 genome of N146
SAMC043552 genome of N56
SAMC043551 genome of N55
SAMC043550 genome of N54
SAMC043549 genome of N52
SAMC043548 genome of N80
SAMC043547 genome of N79
SAMC043546 genome of N78
SAMC043545 genome of N77
SAMC043544 genome of N230
SAMC043543 genome of N229
SAMC043542 genome of N228
SAMC043541 genome of N227
SAMC043540 genome of N226
SAMC043539 genome of N225
SAMC043538 genome of N224
SAMC043537 genome of N223
SAMC043536 genome of N222
SAMC043535 genome of N221
SAMC043534 genome of N220
SAMC043533 genome of N219
SAMC043532 genome of N216
SAMC043531 genome of N215
SAMC043530 genome of N214
SAMC043529 genome of N213
SAMC043528 genome of N212
SAMC043527 genome of N211
SAMC043526 genome of N210
SAMC043525 genome of N209
SAMC043524 genome of N208
SAMC043523 genome of N207
SAMC043522 genome of N121
SAMC043521 genome of N120
SAMC043520 genome of N119
SAMC043519 genome of N118
SAMC043518 genome of N116
SAMC043517 genome of N115
SAMC043516 genome of N114
SAMC043515 genome of N113
SAMC043514 genome of N112
SAMC043513 genome of N111
SAMC043512 genome of N110
SAMC043511 genome of N108
SAMC043510 genome of N107
SAMC043509 genome of N106
SAMC043508 genome of N105
SAMC043507 genome of N103
SAMC043506 genome of N102
SAMC043505 genome of N99
SAMC043504 genome of N98
SAMC043503 genome of N97
SAMC043502 genome of N96
SAMC043501 genome of N95
SAMC043500 genome of N94
SAMC043499 genome of N93
SAMC043498 genome of N92
SAMC043497 genome of N71
SAMC043496 genome of N70
SAMC043495 genome of N69
SAMC043494 genome of N68
SAMC043493 genome of N67
SAMC043492 genome of N45
SAMC043491 genome of N44
SAMC043490 genome of N43
SAMC043489 genome of N42
SAMC043488 genome of N41
SAMC043487 genome of N40
SAMC043486 genome of N39
SAMC043485 genome of N38
SAMC043484 genome of N37
SAMC043483 genome of N35
SAMC043482 genome of N34
SAMC043481 genome of N33
SAMC043480 genome of N32
SAMC043479 genome of N31
SAMC043478 genome of N29
SAMC043477 genome of N28
SAMC043476 genome of N27
SAMC043475 genome of N26
SAMC043474 genome of N25
SAMC043473 genome of N23
SAMC043472 genome of N22
SAMC043471 genome of N20
SAMC043470 genome of N19
SAMC043469 genome of N18
SAMC043468 genome of N17
SAMC043467 genome of N16
SAMC043466 genome of N15
SAMC043465 genome of N14
SAMC043464 genome of N13
SAMC043463 genome of N12
SAMC043462 genome of N11
SAMC043461 genome of N10
SAMC043460 genome of N9
SAMC043459 genome of N8
SAMC043458 genome of N7
SAMC043457 genome of N6
SAMC043456 genome of N5
SAMC043455 genome of N4
SAMC043454 genome of N3
SAMC043453 genome of N2
SAMC043452 genome of N1
GSA (1) -
CRA000978 genome and transcriptome of pistachio
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