Identifier PRJCA000427
Title A Comprehensive Mouse Transcriptomic BodyMap by RNA-seq
Project data type Transcriptome or Gene expression
Organism Mus musculus
Description The mouse has been widely used as a model organism for studying human diseases and for evaluating drug safety and efficacy. Many diseases and drug effects exhibit tissue specificity that may be reflected by tissue-specific gene-expression profiles. Here we construct a comprehensive mouse transcriptomic BodyMap across 17 tissues of six-weeks old C57BL/6JJcl mice using RNA-seq. We find different expression patterns between protein-coding and non-coding genes. Liver expressed the least complex transcriptomes, that is, the smallest number of genes detected in liver across all 17 tissues, whereas testis and ovary harbor more complex transcriptomes than other tissues. We report a comprehensive list of tissue-specific genes across 17 tissues, along with a list of 4,781 housekeeping genes in mouse. In addition, we propose a list of 27 consistently and highly expressed genes that can be used as reference controls in expression-profiling analysis. Our study provides a unique resource of mouse gene-expression profiles, which is helpful for further biomedical research.
Sample scope Multiisolate
Release date 2017-04-19
Publication
PubMed ID Title Journal Doi Year
28646208 A Comprehensive Mouse Transcriptomic BodyMap by RNA-seq Scientific Reports 10.1038/s41598-017-04520-z 2017
Submitter leming   shi  (pgx@fudan.edu.cn)
Affiliation Fudan University
Submission date 2017-04-19

Project Data

Resource name Description
BioSample (72) -
SAMC012853 liver sample from mouse 4
SAMC012852 brain sample from mouse 4
SAMC012851 liver sample from mouse 3
SAMC012850 brain sample from mouse 3
SAMC012849 liver sample from mouse 2
SAMC012848 brain sample from mouse 2
SAMC012847 liver sample from mouse 1
SAMC012846 brain sample from mouse 1
SAMC012845 uterus sample from mouse 4
SAMC012844 muscle sample from mouse 4
SAMC012843 large intestine sample from mouse 4
SAMC012842 small intestine sample from mouse 4
SAMC012841 forestomach sample from mouse 4
SAMC012840 stomach sample from mouse 4
SAMC012839 bone marrow sample from mouse 4
SAMC012838 ovary sample from mouse 4
SAMC012837 thymus sample from mouse 4
SAMC012836 heart sample from mouse 4
SAMC012835 lung sample from mouse 4
SAMC012834 spleen sample from mouse 4
SAMC012833 adrenal gland sample from mouse 4
SAMC012832 kidney sample from mouse 4
SAMC012831 liver sample from mouse 4
SAMC012830 brain sample from mouse 4
SAMC012829 vesicular gland sample from mouse 3
SAMC012828 muscle sample from mouse 3
SAMC012827 large intestine sample from mouse 3
SAMC012826 small intestine sample from mouse 3
SAMC012825 forestomach sample from mouse 3
SAMC012824 stomach sample from mouse 3
SAMC012823 bone marrow sample from mouse 3
SAMC012822 ovary sample from mouse 3
SAMC012821 thymus sample from mouse 3
SAMC012820 heart sample from mouse 3
SAMC012819 lung sample from mouse 3
SAMC012818 spleen sample from mouse 3
SAMC012817 adrenal gland sample from mouse 3
SAMC012816 kidney sample from mouse 3
SAMC012815 liver sample from mouse 3
SAMC012814 brain sample from mouse 3
SAMC012813 vesicular gland sample from mouse 2
SAMC012812 muscle sample from mouse 2
SAMC012811 large intestine sample from mouse 2
SAMC012810 small intestine sample from mouse 2
SAMC012809 forestomach sample from mouse 2
SAMC012808 stomach sample from mouse 2
SAMC012807 bone marrow sample from mouse 2
SAMC012806 testis sample from mouse 2
SAMC012805 thymus sample from mouse 2
SAMC012804 heart sample from mouse 2
SAMC012803 lung sample from mouse 2
SAMC012802 spleen sample from mouse 2
SAMC012801 adrenal gland sample from mouse 2
SAMC012800 kidney sample from mouse 2
SAMC012799 liver sample from mouse 2
SAMC012798 brain sample from mouse 2
SAMC012797 vesicular gland sample from mouse 1
SAMC012796 muscle sample from mouse 1
SAMC012795 large intestine sample from mouse 1
SAMC012794 small intestine sample from mouse 1
SAMC012793 forestomach sample from mouse 1
SAMC012792 stomach sample from mouse 1
SAMC012791 bone marrow sample from mouse 1
SAMC012790 testis sample from mouse 1
SAMC012789 thymus sample from mouse 1
SAMC012788 heart sample from mouse 1
SAMC012787 lung sample from mouse 1
SAMC012786 spleen sample from mouse 1
SAMC012785 adrenal gland sample from mouse 1
SAMC012784 kidney sample from mouse 1
SAMC012783 liver sample from mouse 1
SAMC012782 brain sample from mouse 1
GSA (1) -
CRA000240 CRA000240