Accession PRJCA000313
Title Shuhui498 rice genome sequencing and assembly
Umbrella project

MMDB: Molecular Module-based Designer Breeding Systems

XDA08020000: Analysis of module systems and their coupling effects

XDA08020300: Optimization of multi-module assembly and simulated estimation of its coupling effect

XDA08020302: Database construction and algorithm development

Data Types Whole genome sequencing
Organisms Oryza sativa
Description Sequencing and de novo assembly of a near complete indica rice genome
Sample scope Monoisolate
Release date 2017-05-08
Publication
PubMed ID Article title Journal name DOI Year
Assembly of chromosome-scale contigs by efficiently resolving repetitive sequences with long reads BioRxiv 10.1101/345983 2018
Submitter yan    li  (liyan_bioinf@genetics.ac.cn)
Organization Institute of Genetics and Developmental Biology Chinese Academy of Sciences
Submission date 2016-12-08

Project Data

Resource name Description
BioSample (375) -
SAMC008034 Shuhui498-F3-364
SAMC008033 Shuhui498-F3-363
SAMC008032 Shuhui498-F3-362
SAMC008031 Shuhui498-F3-361
SAMC008030 Shuhui498-F3-360
SAMC008029 Shuhui498-F3-359
SAMC008028 Shuhui498-F3-358
SAMC008027 Shuhui498-F3-357
SAMC008026 Shuhui498-F3-356
SAMC008025 Shuhui498-F3-355
SAMC008024 Shuhui498-F3-354
SAMC008023 Shuhui498-F3-353
SAMC008022 Shuhui498-F3-352
SAMC008021 Shuhui498-F3-351
SAMC008020 Shuhui498-F3-350
SAMC008019 Shuhui498-F3-349
SAMC008018 Shuhui498-F3-348
SAMC008017 Shuhui498-F3-347
SAMC008016 Shuhui498-F3-346
SAMC008015 Shuhui498-F3-345
SAMC008014 Shuhui498-F3-344
SAMC008013 Shuhui498-F3-343
SAMC008012 Shuhui498-F3-342
SAMC008011 Shuhui498-F3-341
SAMC008010 Shuhui498-F3-340
SAMC008009 Shuhui498-F3-339
SAMC008008 Shuhui498-F3-338
SAMC008007 Shuhui498-F3-337
SAMC008006 Shuhui498-F3-336
SAMC008005 Shuhui498-F3-335
SAMC008004 Shuhui498-F3-334
SAMC008003 Shuhui498-F3-333
SAMC008002 Shuhui498-F3-332
SAMC008001 Shuhui498-F3-331
SAMC008000 Shuhui498-F3-330
SAMC007999 Shuhui498-F3-329
SAMC007998 Shuhui498-F3-328
SAMC007997 Shuhui498-F3-327
SAMC007996 Shuhui498-F3-326
SAMC007995 Shuhui498-F3-325
SAMC007994 Shuhui498-F3-324
SAMC007993 Shuhui498-F3-323
SAMC007992 Shuhui498-F3-322
SAMC007991 Shuhui498-F3-321
SAMC007990 Shuhui498-F3-320
SAMC007989 Shuhui498-F3-319
SAMC007988 Shuhui498-F3-318
SAMC007987 Shuhui498-F3-317
SAMC007986 Shuhui498-F3-316
SAMC007985 Shuhui498-F3-315
SAMC007984 Shuhui498-F3-314
SAMC007983 Shuhui498-F3-313
SAMC007982 Shuhui498-F3-312
SAMC007981 Shuhui498-F3-311
SAMC007980 Shuhui498-F3-310
SAMC007979 Shuhui498-F3-309
SAMC007978 Shuhui498-F3-308
SAMC007977 Shuhui498-F3-307
SAMC007976 Shuhui498-F3-306
SAMC007975 Shuhui498-F3-305
SAMC007974 Shuhui498-F3-304
SAMC007973 Shuhui498-F3-303
SAMC007972 Shuhui498-F3-302
SAMC007971 Shuhui498-F3-301
SAMC007970 Shuhui498-F3-300
SAMC007969 Shuhui498-F3-299
SAMC007968 Shuhui498-F3-298
SAMC007967 Shuhui498-F3-297
SAMC007966 Shuhui498-F3-296
SAMC007965 Shuhui498-F3-295
SAMC007964 Shuhui498-F3-294
SAMC007963 Shuhui498-F3-293
SAMC007962 Shuhui498-F3-292
SAMC007961 Shuhui498-F3-291
SAMC007960 Shuhui498-F3-290
SAMC007959 Shuhui498-F3-289
SAMC007958 Shuhui498-F3-288
SAMC007957 Shuhui498-F3-287
SAMC007956 Shuhui498-F3-286
SAMC007955 Shuhui498-F3-285
SAMC007954 Shuhui498-F3-284
SAMC007953 Shuhui498-F3-283
SAMC007952 Shuhui498-F3-282
SAMC007951 Shuhui498-F3-281
SAMC007950 Shuhui498-F3-280
SAMC007949 Shuhui498-F3-279
SAMC007948 Shuhui498-F3-278
SAMC007947 Shuhui498-F3-277
SAMC007946 Shuhui498-F3-276
SAMC007945 Shuhui498-F3-275
SAMC007944 Shuhui498-F3-274
SAMC007943 Shuhui498-F3-273
SAMC007942 Shuhui498-F3-272
SAMC007941 Shuhui498-F3-271
SAMC007940 Shuhui498-F3-270
SAMC007939 Shuhui498-F3-269
SAMC007938 Shuhui498-F3-268
SAMC007937 Shuhui498-F3-267
SAMC007936 Shuhui498-F3-266
SAMC007935 Shuhui498-F3-265
SAMC007934 Shuhui498-F3-264
SAMC007933 Shuhui498-F3-263
SAMC007932 Shuhui498-F3-262
SAMC007931 Shuhui498-F3-261
SAMC007930 Shuhui498-F3-260
SAMC007929 Shuhui498-F3-259
SAMC007928 Shuhui498-F3-258
SAMC007927 Shuhui498-F3-257
SAMC007926 Shuhui498-F3-256
SAMC007925 Shuhui498-F3-255
SAMC007924 Shuhui498-F3-254
SAMC007923 Shuhui498-F3-253
SAMC007922 Shuhui498-F3-252
SAMC007921 Shuhui498-F3-251
SAMC007920 Shuhui498-F3-250
SAMC007919 Shuhui498-F3-249
SAMC007918 Shuhui498-F3-248
SAMC007917 Shuhui498-F3-247
SAMC007916 Shuhui498-F3-246
SAMC007915 Shuhui498-F3-245
SAMC007914 Shuhui498-F3-244
SAMC007913 Shuhui498-F3-243
SAMC007912 Shuhui498-F3-242
SAMC007911 Shuhui498-F3-241
SAMC007910 Shuhui498-F3-240
SAMC007909 Shuhui498-F3-239
SAMC007908 Shuhui498-F3-238
SAMC007907 Shuhui498-F3-237
SAMC007906 Shuhui498-F3-236
SAMC007905 Shuhui498-F3-235
SAMC007904 Shuhui498-F3-234
SAMC007903 Shuhui498-F3-233
SAMC007902 Shuhui498-F3-232
SAMC007901 Shuhui498-F3-231
SAMC007900 Shuhui498-F3-230
SAMC007899 Shuhui498-F3-229
SAMC007898 Shuhui498-F3-228
SAMC007897 Shuhui498-F3-227
SAMC007896 Shuhui498-F3-226
SAMC007895 Shuhui498-F3-225
SAMC007894 Shuhui498-F3-224
SAMC007893 Shuhui498-F3-223
SAMC007892 Shuhui498-F3-222
SAMC007891 Shuhui498-F3-221
SAMC007890 Shuhui498-F3-220
SAMC007889 Shuhui498-F3-219
SAMC007888 Shuhui498-F3-218
SAMC007887 Shuhui498-F3-217
SAMC007886 Shuhui498-F3-216
SAMC007885 Shuhui498-F3-215
SAMC007884 Shuhui498-F3-214
SAMC007883 Shuhui498-F3-213
SAMC007882 Shuhui498-F3-212
SAMC007881 Shuhui498-F3-211
SAMC007880 Shuhui498-F3-210
SAMC007879 Shuhui498-F3-209
SAMC007878 Shuhui498-F3-208
SAMC007877 Shuhui498-F3-207
SAMC007876 Shuhui498-F3-206
SAMC007875 Shuhui498-F3-205
SAMC007874 Shuhui498-F3-204
SAMC007873 Shuhui498-F3-203
SAMC007872 Shuhui498-F3-202
SAMC007871 Shuhui498-F3-201
SAMC007870 Shuhui498-F3-200
SAMC007869 Shuhui498-F3-199
SAMC007868 Shuhui498-F3-198
SAMC007867 Shuhui498-F3-197
SAMC007866 Shuhui498-F3-196
SAMC007865 Shuhui498-F3-195
SAMC007864 Shuhui498-F3-194
SAMC007863 Shuhui498-F3-193
SAMC007862 Shuhui498-F3-192
SAMC007861 Shuhui498-F3-191
SAMC007860 Shuhui498-F3-190
SAMC007859 Shuhui498-F3-189
SAMC007858 Shuhui498-F3-188
SAMC007857 Shuhui498-F3-187
SAMC007856 Shuhui498-F3-186
SAMC007855 Shuhui498-F3-185
SAMC007854 Shuhui498-F3-184
SAMC007853 Shuhui498-F3-183
SAMC007852 Shuhui498-F3-182
SAMC007851 Shuhui498-F3-181
SAMC007850 Shuhui498-F3-180
SAMC007849 Shuhui498-F3-179
SAMC007848 Shuhui498-F3-178
SAMC007847 Shuhui498-F3-177
SAMC007846 Shuhui498-F3-176
SAMC007845 Shuhui498-F3-175
SAMC007844 Shuhui498-F3-174
SAMC007843 Shuhui498-F3-173
SAMC007842 Shuhui498-F3-172
SAMC007841 Shuhui498-F3-171
SAMC007840 Shuhui498-F3-170
SAMC007839 Shuhui498-F3-169
SAMC007838 Shuhui498-F3-168
SAMC007837 Shuhui498-F3-167
SAMC007836 Shuhui498-F3-166
SAMC007835 Shuhui498-F3-165
SAMC007834 Shuhui498-F3-164
SAMC007833 Shuhui498-F3-163
SAMC007832 Shuhui498-F3-162
SAMC007831 Shuhui498-F3-161
SAMC007830 Shuhui498-F3-160
SAMC007829 Shuhui498-F3-159
SAMC007828 Shuhui498-F3-158
SAMC007827 Shuhui498-F3-157
SAMC007826 Shuhui498-F3-156
SAMC007825 Shuhui498-F3-155
SAMC007824 Shuhui498-F3-154
SAMC007823 Shuhui498-F3-153
SAMC007822 Shuhui498-F3-152
SAMC007821 Shuhui498-F3-151
SAMC007820 Shuhui498-F3-150
SAMC007819 Shuhui498-F3-149
SAMC007818 Shuhui498-F3-148
SAMC007817 Shuhui498-F3-147
SAMC007816 Shuhui498-F3-146
SAMC007815 Shuhui498-F3-145
SAMC007814 Shuhui498-F3-144
SAMC007813 Shuhui498-F3-143
SAMC007812 Shuhui498-F3-142
SAMC007811 Shuhui498-F3-141
SAMC007810 Shuhui498-F3-140
SAMC007809 Shuhui498-F3-139
SAMC007808 Shuhui498-F3-138
SAMC007807 Shuhui498-F3-137
SAMC007806 Shuhui498-F3-136
SAMC007805 Shuhui498-F3-135
SAMC007804 Shuhui498-F3-134
SAMC007803 Shuhui498-F3-133
SAMC007802 Shuhui498-F3-132
SAMC007801 Shuhui498-F3-131
SAMC007800 Shuhui498-F3-130
SAMC007799 Shuhui498-F3-129
SAMC007798 Shuhui498-F3-128
SAMC007797 Shuhui498-F3-127
SAMC007796 Shuhui498-F3-126
SAMC007795 Shuhui498-F3-125
SAMC007794 Shuhui498-F3-124
SAMC007793 Shuhui498-F3-123
SAMC007792 Shuhui498-F3-122
SAMC007791 Shuhui498-F3-121
SAMC007790 Shuhui498-F3-120
SAMC007789 Shuhui498-F3-119
SAMC007788 Shuhui498-F3-118
SAMC007787 Shuhui498-F3-117
SAMC007786 Shuhui498-F3-116
SAMC007785 Shuhui498-F3-115
SAMC007784 Shuhui498-F3-114
SAMC007783 Shuhui498-F3-113
SAMC007782 Shuhui498-F3-112
SAMC007781 Shuhui498-F3-111
SAMC007780 Shuhui498-F3-110
SAMC007779 Shuhui498-F3-109
SAMC007778 Shuhui498-F3-108
SAMC007777 Shuhui498-F3-107
SAMC007776 Shuhui498-F3-106
SAMC007775 Shuhui498-F3-105
SAMC007774 Shuhui498-F3-104
SAMC007773 Shuhui498-F3-103
SAMC007772 Shuhui498-F3-102
SAMC007771 Shuhui498-F3-101
SAMC007770 Shuhui498-F3-100
SAMC007769 Shuhui498-F3-99
SAMC007768 Shuhui498-F3-98
SAMC007767 Shuhui498-F3-97
SAMC007766 Shuhui498-F3-96
SAMC007765 Shuhui498-F3-95
SAMC007764 Shuhui498-F3-94
SAMC007763 Shuhui498-F3-93
SAMC007762 Shuhui498-F3-92
SAMC007761 Shuhui498-F3-91
SAMC007760 Shuhui498-F3-90
SAMC007759 Shuhui498-F3-89
SAMC007758 Shuhui498-F3-88
SAMC007757 Shuhui498-F3-87
SAMC007756 Shuhui498-F3-86
SAMC007755 Shuhui498-F3-85
SAMC007754 Shuhui498-F3-84
SAMC007753 Shuhui498-F3-83
SAMC007752 Shuhui498-F3-82
SAMC007751 Shuhui498-F3-81
SAMC007750 Shuhui498-F3-80
SAMC007749 Shuhui498-F3-79
SAMC007748 Shuhui498-F3-78
SAMC007747 Shuhui498-F3-77
SAMC007746 Shuhui498-F3-76
SAMC007745 Shuhui498-F3-75
SAMC007744 Shuhui498-F3-74
SAMC007743 Shuhui498-F3-73
SAMC007742 Shuhui498-F3-72
SAMC007741 Shuhui498-F3-71
SAMC007740 Shuhui498-F3-70
SAMC007739 Shuhui498-F3-69
SAMC007738 Shuhui498-F3-68
SAMC007737 Shuhui498-F3-67
SAMC007736 Shuhui498-F3-66
SAMC007735 Shuhui498-F3-65
SAMC007734 Shuhui498-F3-64
SAMC007733 Shuhui498-F3-63
SAMC007732 Shuhui498-F3-62
SAMC007731 Shuhui498-F3-61
SAMC007730 Shuhui498-F3-60
SAMC007729 Shuhui498-F3-59
SAMC007728 Shuhui498-F3-58
SAMC007727 Shuhui498-F3-57
SAMC007726 Shuhui498-F3-56
SAMC007725 Shuhui498-F3-55
SAMC007724 Shuhui498-F3-54
SAMC007723 Shuhui498-F3-53
SAMC007722 Shuhui498-F3-52
SAMC007721 Shuhui498-F3-51
SAMC007720 Shuhui498-F3-50
SAMC007719 Shuhui498-F3-49
SAMC007718 Shuhui498-F3-48
SAMC007717 Shuhui498-F3-47
SAMC007716 Shuhui498-F3-46
SAMC007715 Shuhui498-F3-45
SAMC007714 Shuhui498-F3-44
SAMC007713 Shuhui498-F3-43
SAMC007712 Shuhui498-F3-42
SAMC007711 Shuhui498-F3-41
SAMC007710 Shuhui498-F3-40
SAMC007709 Shuhui498-F3-39
SAMC007708 Shuhui498-F3-38
SAMC007707 Shuhui498-F3-37
SAMC007706 Shuhui498-F3-36
SAMC007705 Shuhui498-F3-35
SAMC007704 Shuhui498-F3-34
SAMC007703 Shuhui498-F3-33
SAMC007702 Shuhui498-F3-32
SAMC007701 Shuhui498-F3-31
SAMC007700 Shuhui498-F3-30
SAMC007699 Shuhui498-F3-29
SAMC007698 Shuhui498-F3-28
SAMC007697 Shuhui498-F3-27
SAMC007696 Shuhui498-F3-26
SAMC007695 Shuhui498-F3-25
SAMC007694 Shuhui498-F3-24
SAMC007693 Shuhui498-F3-23
SAMC007692 Shuhui498-F3-22
SAMC007691 Shuhui498-F3-21
SAMC007690 Shuhui498-F3-20
SAMC007689 Shuhui498-F3-19
SAMC007688 Shuhui498-F3-18
SAMC007687 Shuhui498-F3-17
SAMC007686 Shuhui498-F3-16
SAMC007685 Shuhui498-F3-15
SAMC007684 Shuhui498-F3-14
SAMC007683 Shuhui498-F3-13
SAMC007682 Shuhui498-F3-12
SAMC007681 Shuhui498-F3-11
SAMC007680 Shuhui498-F3-10
SAMC007679 Shuhui498-F3-9
SAMC007678 Shuhui498-F3-8
SAMC007677 Shuhui498-F3-7
SAMC007676 Shuhui498-F3-6
SAMC007675 Shuhui498-F3-5
SAMC007674 Shuhui498-F3-4
SAMC007673 Shuhui498-F3-3
SAMC007672 Shuhui498-F3-2
SAMC007671 Shuhui498-F3-1
SAMC007670 Shuhui498_RNA-st
SAMC007669 Shuhui498_RNA-SP2
SAMC007668 Shuhui498_RNA-SP1
SAMC007667 Shuhui498_RNA-R
SAMC007666 Shuhui498_RNA-L2
SAMC007665 Shuhui498_RNA-L1
SAMC007664 Shuhui498_RNA-h2
SAMC007663 Shuhui498_RNA-h1
SAMC007662 Shuhui498_pacbio
SAMC007661 Shuhui498_fosmid
SAMC007660 Shuhui498_PCRfree1
GSA (1) -
CRA000161 CRA_161
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