Accession PRJCA000251
Title Rattus norvegicus population genetics
Data Types Whole genome sequencing
Organisms Rattus norvegicus
Rattus rattus
Description We sequenced rat whole genomes to explore the origin and the dispersal routes of the brown rat and the domestication of the laboratory rat.
Sample scope Monoisolate
Release date 2017-12-08
Publication
PubMed ID Article title Journal name DOI Year
29087519 Out of Southern East Asia of the Brown Rat Revealed by Large-Scale Genome Sequencing Molecular Biology and Evolution 10.1093/molbev/msx276 2018
28961982 Rapid Evolution of Genes Involved in Learning and Energy Metabolism for Domestication of the Laboratory Rat Molecular Biology and Evolution 10.1093/molbev/msx238
Submitter Dong-Dong    Wu  (wudongdong@mail.kiz.ac.cn)
Organization Kunming Institute of Zoology, CAS
Submission date 2016-07-06

Project Data

Resource name Description
BioSample (143) -
SAMC016514 transcriptome Lab4
SAMC016513 transcriptome Wild6
SAMC016512 transcriptome Wild5
SAMC016511 transcriptome Wild4
SAMC016510 transcriptome Wild3
SAMC016509 transcriptome Wild2
SAMC016508 transcriptome Wild1
SAMC016507 transcriptome Lab3
SAMC016506 transcriptome Lab2
SAMC016505 transcriptome Lab1
SAMC016504 genome of SHR8
SAMC016503 genome of SHR7
SAMC016502 genome of SHR6
SAMC016501 genome of SHR5
SAMC016500 genome of SHR4
SAMC016499 genome of SHR3
SAMC016498 genome of SHR2
SAMC016497 genome of SHR1
SAMC016496 genome of SD
SAMC016495 genome of russia2
SAMC016494 genome of russia1
SAMC016493 genome of Morocco
SAMC016492 genome of Mali
SAMC016491 genome of China2
SAMC016490 genome of China1
SAMC016489 genome of black_rat
SAMC016488 genome of YN2
SAMC016487 genome of Iran1
SAMC016486 genome of HN3
SAMC016485 genome of HN2
SAMC016484 genome of GX3
SAMC016483 genome of GX2
SAMC016482 genome of GX1
SAMC016481 genome of ZJ2
SAMC016480 genome of ZJ1
SAMC016479 genome of YN7
SAMC016478 genome of YN6
SAMC016477 genome of YN5
SAMC016476 genome of YN4
SAMC016475 genome of YN3
SAMC016474 genome of YN1
SAMC016473 genome of Vietnam1
SAMC016472 genome of Thailand1
SAMC016471 genome of Seychelles5
SAMC016470 genome of Seychelles4
SAMC016469 genome of Seychelles3
SAMC016468 genome of Seychelles2
SAMC016467 genome of Seychelles1
SAMC016466 genome of Senegal3
SAMC016465 genome of Senegal2
SAMC016464 genome of Senegal1
SAMC016463 genome of SC1
SAMC016462 genome of Russia5
SAMC016461 genome of Russia4
SAMC016460 genome of Russia3
SAMC016459 genome of Russia2
SAMC016458 genome of Russia1
SAMC016457 genome of QH2
SAMC016456 genome of QH1
SAMC016455 genome of Philippines1
SAMC016454 genome of Norway8
SAMC016453 genome of Norway7
SAMC016452 genome of Norway6
SAMC016451 genome of Norway5
SAMC016450 genome of Norway4
SAMC016449 genome of Norway3
SAMC016448 genome of Norway2
SAMC016447 genome of Norway1
SAMC016446 genome of Morocco1
SAMC016445 genome of Mali6
SAMC016444 genome of Mali5
SAMC016443 genome of Mali4
SAMC016442 genome of Mali3
SAMC016441 genome of Mali2
SAMC016440 genome of Mali1
SAMC016439 genome of Mada5
SAMC016438 genome of Mada4
SAMC016437 genome of Mada3
SAMC016436 genome of Mada2
SAMC016435 genome of Mada1
SAMC016434 genome of JX7
SAMC016433 genome of JX6
SAMC016432 genome of JX5
SAMC016431 genome of JX4
SAMC016430 genome of JX3
SAMC016429 genome of JX2
SAMC016428 genome of JX1
SAMC016427 genome of Iran9
SAMC016426 genome of Iran8
SAMC016425 genome of Iran7
SAMC016424 genome of Iran6
SAMC016423 genome of Iran5
SAMC016422 genome of Iran4
SAMC016421 genome of Iran3
SAMC016420 genome of Iran2
SAMC016419 genome of Iran13
SAMC016418 genome of Iran12
SAMC016417 genome of Iran11
SAMC016416 genome of Iran10
SAMC016415 genome of Iceland7
SAMC016414 genome of Iceland6
SAMC016413 genome of Iceland5
SAMC016412 genome of Iceland4
SAMC016411 genome of Iceland3
SAMC016410 genome of Iceland2
SAMC016409 genome of Iceland1
SAMC016408 genome of HN1
SAMC016407 genome of HLJ5
SAMC016406 genome of HLJ4
SAMC016405 genome of HLJ3
SAMC016404 genome of HLJ2
SAMC016403 genome of HLJ1
SAMC016402 genome of HB5
SAMC016401 genome of HB4
SAMC016400 genome of HB3
SAMC016399 genome of HB2
SAMC016398 genome of HB1
SAMC016397 genome of GD6
SAMC016396 genome of GD5
SAMC016395 genome of GD4
SAMC016394 genome of GD3
SAMC016393 genome of GD2
SAMC016392 genome of GD1
SAMC016391 genome of France9
SAMC016390 genome of France8
SAMC016389 genome of France7
SAMC016388 genome of France6
SAMC016387 genome of France5
SAMC016386 genome of France4
SAMC016385 genome of France3
SAMC016384 genome of France2
SAMC016383 genome of France10
SAMC016382 genome of France1
SAMC016381 genome of Comorin2
SAMC016380 genome of Comorin1
SAMC016379 genome of Cambodia5
SAMC016378 genome of Cambodia4
SAMC016377 genome of Cambodia3
SAMC016376 genome of Cambodia2
SAMC016375 genome of Cambodia1
SAMC016374 genome of BJ1
SAMC016373 genome of AH2
SAMC016372 genome of AH1
GSA (1) -
CRA000345 genome and transcriptome of rat
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