Identifier PRJCA000203
Title cancer genome sequencing
Project data type Targeted Locus (Loci)
Organism Homo sapiens
Description We recruited a female patient who had a chronic Hepatitis B virus infection and who was diagnosed with HCC at the age of 35. The tumour section was determined to be grade II–III HCC with prominent clear cell components. The adjacent non-tumour tissue was dissected as a control.Two micrograms of genomic DNA from the tumour sample was digested for 30min at 37C using 1 ml EcoRI, then 100 bp single end reads were generated using a Hiseq 2000.
Sample scope Multiisolate
Release date 2016-03-11
Publication
PubMed ID Title Journal Doi Year
23962614 Determination of genomic copy number alteration emphasizing a restriction site-based strategy of genome re-sequencing. Bioinformatics (Oxford, England) 10.1093/bioinformatics/btt481 2013
Submitter Caihong  Zheng  (zhengch@big.ac.cn)
Affiliation Chinese Academy of Sciences
Submission date 2016-03-11

Project Data

Resource name Description
BioSample (1) -
SAMC003873 HCC_RAD
GSA (1) -
CRA000082 CRA000082