RED (RNA Editing Detector) detect and visualize potential RNA editing sites

Introduction

RNA editing is one of the post- or co-transcriptional processes with modification of RNA nucleotides from their genome-encoded sequence. In human, RNA editing event occurs mostly by deamination of adenosine to inosine (A-to-I) conversion through ADAR enzymes.

RED(RNA Editing Detector) is a program to detect and visualise RNA editing events at genomic scale using next-generation sequencing data. RED can also be used in command line.

Publications

  1. RED: A Java-MySQL Software for Identifying and Visualizing RNA Editing Sites Using RuleBased and Statistical Filters
    Yongmei Sun, Xing Li, Di Wu, Qi Pan, Yuefeng Ji, Hong Ren, Keyue Ding, March 1, 2016 - PLoS ONE
    Cited by Sun Y, Li X, Wu D, Pan Q, Ji Y, Ren H, et al. (2016) RED: A Java-MySQL Software for Identifying and Visualizing RNA Editing Sites Using Rule-Based and Statistical Filters. PLoS ONE 11(3): e0150465. doi:10.1371/journal.pone.0150465 (Google Schoolar as of September 5, 2017)

Credits

  1. Yongmei Sun ding.keyue@cqmu.edu.cn
    Developer

    School of Information and Communication Engineering, Beijing University of Posts, China

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Summary
AccessionBT007067
Tool TypeApplication
CategoryRNA editing
PlatformsLinux/Unix
TechnologiesJava, R
User InterfaceTerminal Command Line
Input DataBAM, VCF
Latest Release0.0.3 (September 4, 2017)
Download Count216
Submitted Byli man
Fundings

The study was supported by the Recruitment Program of Global Youth Experts in China (KD). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.