PGAP pan-genomes analysis pipeline

Introduction

PGAP is a pan-genomes analysis pipeline developed with Perl. It could perform five analytic functions with only one command, including cluster analysis of functional genes, pan-genome profile analysis, genetic variation analysis of functional genes, species evolution analysis and function enrichment analysis of gene clusters.

Publications

  1. PGAP: pan-genomes analysis pipeline
    Cite this
    Zhao Y1, Wu J, Yang J, Sun S, Xiao J, Yu J., 22012 Feb 1 - Bioinformatics
    Cited by 129 (Google Schoolar as of June 27, 2017)

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Summary
AccessionBT000005
Tool TypePipeline & Protocol
CategorySoftware pipelines
PlatformsLinux/Unix
TechnologiesPerl
User InterfaceTerminal Command Line
Input DataFASTA
Latest Release1.2.1 (June 26, 2017)
Download Count289
Country/RegionChina
Submitted Byxiaojingfa@big.ac.cn