Introduction

Increasing quantitative data generated from transcriptomics and proteomics require integrative strategies for analysis. Here, we present an R package, clusterProfiler that automates the process of biological-term classification and the enrichment analysis of gene clusters. The analysis module and visualization module were combined into a reusable workflow. Currently, clusterProfiler supports three species, including humans, mice, and yeast. Methods provided in this package can be easily extended to other species and ontologies. The clusterProfiler package is released under Artistic-2.0 License within Bioconductor project. The source code and vignette are freely available at http://bioconductor.org/packages/release/bioc/html/clusterProfiler.html.

Publications

  1. clusterProfiler: an R package for comparing biological themes among gene clusters.
    Cite this
    Yu G, Wang LG, Han Y, He QY, 2012-05-01 - Omics : a journal of integrative biology

Credits

  1. Guangchuang Yu
    Developer

  2. Li-Gen Wang
    Developer

  3. Yanyan Han
    Developer

  4. Qing-Yu He
    Investigator

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Summary
AccessionBT000150
Tool TypeApplication
Category
PlatformsLinux/Unix
TechnologiesR
User InterfaceTerminal Command Line
Download Count0
Submitted ByQing-Yu He